Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01421 ATGTCCAACAGGTTTTGCAAGTTCTATGCCCGTGGAGCATGTTTGAAGGGGGATCAATGTGATTTTGCTCATGAGAAAAAGGATGATATTTGCAGCTATTATCAGAAAGGATTCTGTGCATATGGTAGTAGATGCAGATATAAGCATGTCAAAGCTTCCCAACCGTCATCTTCAGCAAATGGACGCCATTCTCCTGTTTTGGATCCTGTGGTGAATCATATCACTAAAGGAACATCAAGTTGGGTTCTGAAGGCTGTGAAGTCATCTTCATCGGACAAGCGTGCAAGGAGCTCGCAAAAAAAGAATCCAGCCTCTCTTGGAAATGATGTTGGTCAATCCAGTACTAGTAGTGCTATACCATCTGAACATTTGTTTTGTGCATTTGCTGCTGCCAACTGCCCCCTTGAAGATAAATGTTCTCGCATTCATGGAAATCAGTGCTTATACTGTAGAAAATTTTGCTTACATCCTTCTGATTGGAAGGAAAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGGGAAAATACCTTAAGGCTTTGGAAGATAGTCAAGAAGTAGAGTGCAATGTTTGTTTGGAACGTGTTCTGTCCAAACCTAAACCAGCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCTGCCCCAACATCTGGAATGGACATCGGTAATGCTGGCACTGCTAATACAGTCAGAACCTGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAGGAAATTATCAACAACTACAAGGCAAACTGCAAATTAATTGATTGCAAGCATTTTAACTTTGGAAATGGGAATTGTCCATTCGGGGCTAGTTGCTTCTACAAGCATACAGTGAAGCCTGGCTCTTACACATGGATACATCACAGGCCACCACCTCAGTGTAGACAGAACCATTTTGATATGTATGACATGTTGGACATGCTCCAAGATGTTGACTTAACAAGTGCAGAATATTTTTCCATCATGAGGGGTTCAGACTTTTTTGATGATATGGATCCATTTGAGATGATGGATATATCTCATAGGCTTGCTGGTGACTCAGGTCCTTGTTTAGGTCTTTTTGATTCTGATGAGGAGGACTTGGATTTTTTTCAGATGGCTGCATTGTCGGAAGCGCTTGCTTCTGGTGTGGATGATTTTGGTCCCGAAGATATTGGTAATGAAGATTTCAATCCTATGGAGGCTGCCTTGTTACCAATGATGATGCATTCTAATATGGAAGATGAAGATGATGATGAGGAAGAAGAATACAGTGATGAAGACTACTAG 1362 0.4082 MSNRFCKFYARGACLKGDQCDFAHEKKDDICSYYQKGFCAYGSRCRYKHVKASQPSSSANGRHSPVLDPVVNHITKGTSSWVLKAVKSSSSDKRARSSQKKNPASLGNDVGQSSTSSAIPSEHLFCAFAAANCPLEDKCSRIHGNQCLYCRKFCLHPSDWKEKENHLRTCEKKGKYLKALEDSQEVECNVCLERVLSKPKPADCKFGLLPECDHAFCLSCIRNWRNSAAPTSGMDIGNAGTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIINNYKANCKLIDCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQCRQNHFDMYDMLDMLQDVDLTSAEYFSIMRGSDFFDDMDPFEMMDISHRLAGDSGPCLGLFDSDEEDLDFFQMAALSEALASGVDDFGPEDIGNEDFNPMEAALLPMMMHSNMEDEDDDEEEEYSDEDY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01421 453 ProSiteProfiles Zinc finger RING-type profile. 188 252 IPR001841 -
Gma08g01421 453 MobiDBLite consensus disorder prediction 90 112 - -
Gma08g01421 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 50 IPR000571 GO:0046872
Gma08g01421 453 Pfam Zinc finger, C3HC4 type (RING finger) 188 251 IPR018957 GO:0046872
Gma08g01421 453 Pfam RNA-binding, Nab2-type zinc finger 286 307 - -
Gma08g01421 453 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Gma08g01421 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 286 IPR013083 -
Gma08g01421 453 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Gma08g01421 453 CDD RING-HC_MKRN 188 252 - -
Gma08g01421 453 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Gma08g01421 453 SMART ring_2 188 251 IPR001841 -
Gma08g01421 453 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Gma08g01421 453 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Gma08g01421 453 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 453 - -
Gma08g01421 453 SUPERFAMILY RING/U-box 180 258 - -
Gma08g01421 453 ProSiteProfiles Zinc finger C3H1-type profile. 281 310 IPR000571 GO:0046872
Gma08g01421 453 PANTHER MAKORIN-RELATED 1 453 IPR045072 -
Gma08g01421 453 SUPERFAMILY CCCH zinc finger 24 49 IPR036855 GO:0046872
Gma08g01421 453 SMART c3hfinal6 281 309 IPR000571 GO:0046872
Gma08g01421 453 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Gma08g01421 453 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Gma08g01421 453 SMART c3hfinal6 121 145 IPR000571 GO:0046872
Gma08g01421 453 Gene3D - 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01421 Gma-Chr8 12134382 12138868 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma08g01421 zf-C3HC4 1.1e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01421 K15687 - gmx:100819577 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02599 15 54124156 54138161 Gma08g01421 08 12134382 12138868 GST