Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01419 ATGTCTAAGAGGTTTCTTTGCAAGTTCTTTGCTCATGGAGCTTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATGTATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAATCGAACCCCAGACCCTGGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTGCATCAAATGGTGTTGCTACAGGGGCAGAGTTTTCTCTTTCCAGTAGTCCTTACCTTCTTCCTAGTGAACCGGCTTGGAATCGAGAACTGGTTTGGAATCAAGAATTTGGGTATCATGAACCTTTATGGGAAGACAATGTTGGTCAATCAATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGGAGCTGGAAACTGTCCACGAGGCGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAACATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGACTTGCGAAAATAAGCGTAAGCATCTTGAGGCATTGAAACAAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCATGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTATCAGAATGTGATCATCCATTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAATAGCACATTGAGGGCATGTCCTATTTGTCGTAAGCTGTCGTACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATTAACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGAAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATTTCAAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGAGGGTGATACTGTAATTGCAAAAGACATCAGGTTGTCAGATTTCCTTTCTAACATGCATTTAAGATGA 1092 0.4194 MSKRFLCKFFAHGACLKGEHCEFSHDWKDPPNNVCTFYQKGVCAYGSRCRYDHVKASREQSSAPSSSVIEPQTLVSDTVAFGNTRAASNGVATGAEFSLSSSPYLLPSEPAWNRELVWNQEFGYHEPLWEDNVGQSIITSPSELSICSFAGAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKTCENKRKHLEALKQSQEIECSVCLEHVLSKPTAAECKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIINNYKAKLKSIDCKHFDFGEGNCPFGTSCFYKHAFQDGRLEQVVLRHLGAAEGDTVIAKDIRLSDFLSNMHLR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01419 363 Pfam Zinc finger, C3HC4 type (RING finger) 210 267 IPR018957 GO:0046872
Gma08g01419 363 Gene3D - 1 31 - -
Gma08g01419 363 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Gma08g01419 363 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Gma08g01419 363 SMART c3hfinal6 297 325 IPR000571 GO:0046872
Gma08g01419 363 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Gma08g01419 363 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Gma08g01419 363 CDD RING-HC_MKRN 210 268 - -
Gma08g01419 363 Coils Coil 185 209 - -
Gma08g01419 363 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Gma08g01419 363 ProSiteProfiles Zinc finger RING-type profile. 210 268 IPR001841 -
Gma08g01419 363 ProSiteProfiles Zinc finger C3H1-type profile. 297 326 IPR000571 GO:0046872
Gma08g01419 363 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Gma08g01419 363 PANTHER MAKORIN-RELATED 1 363 IPR045072 -
Gma08g01419 363 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Gma08g01419 363 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Gma08g01419 363 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Gma08g01419 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 305 IPR013083 -
Gma08g01419 363 Gene3D - 32 168 - -
Gma08g01419 363 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 1 363 - -
Gma08g01419 363 SUPERFAMILY RING/U-box 198 274 - -
Gma08g01419 363 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Gma08g01419 363 SMART ring_2 210 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01419 Gma-Chr8 12116683 12125024 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma08g01419 zf-C3HC4 1.1e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01419 K15687 - gmx:100817071 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02594 15 54052736 54060530 Gma08g01419 08 12116683 12125024 GST