Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01406 ATGGACAAGGGGGTGCCACCTAGCCTCTTCGTCAATGACGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAGCAAGAGCAGGAGAAAGGGAAGAATGTCAAATTGGAGGATTCTAAACCAATTAAGGTTAATTCAGGGTCTTTGTCTCCCAATCACTCCATTACCAAAACGCCCGTGGACTTGAAGGTTAATGACACAAGAAAAACATCTCAGGGTGGTTCCAGTGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTAAGTGCTGATGAGGATGAAGAAACTGAAGCTGGGTATGTTTCAAATGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCATTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTAACACGCCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTGTTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAGATGCTCTTGGGCAATCAAGGGAATCACAGGTGCCTCGTAACGGGGGTACAAGCACTTCATCTTCCAAACAGGCTAGTGGTCATCAGAGATCATCTCAGCAGCATACATACCAAATTCCTGCATCTGCTTTATATGAAAGTCCTGACAATCCAAGAGCTTCTGGATTTTCAATTCAAACATCACCAGTAGGAAGCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCGCTAATGGAGTTCTACATGAAAAAAGCTGCACGGGAGGAGAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTCGAGAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCTAGGGAGGCTGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACCGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTTTGGGTGGATCCAGGAAGGGTATTGCGGATCCTATCATGGCTGGTAATGTTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGAGTGCAGAGGATGACATATACGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACCGACCCAATCCCCTGAACAATCCCCGCAAGGCTTATTACTGA 1308 0.4541 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLEDSKPIKVNSGSLSPNHSITKTPVDLKVNDTRKTSQGGSSGKLAFSLKQKSKLVPPPVKLSADEDEETEAGYVSNDAPLKRQKLGQEEGIDQSSRQLDVAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYRLAQEEDALGQSRESQVPRNGGTSTSSSKQASGHQRSSQQHTYQIPASALYESPDNPRASGFSIQTSPVGSSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLATCNDAAAQKAAREAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01406 435 ProSiteProfiles G-patch domain profile. 352 399 IPR000467 GO:0003676
Gma08g01406 435 MobiDBLite consensus disorder prediction 23 144 - -
Gma08g01406 435 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 435 IPR040169 -
Gma08g01406 435 Gene3D Surp module 119 201 IPR035967 GO:0003723|GO:0006396
Gma08g01406 435 MobiDBLite consensus disorder prediction 201 241 - -
Gma08g01406 435 Pfam Surp module 146 196 IPR000061 GO:0003723|GO:0006396
Gma08g01406 435 MobiDBLite consensus disorder prediction 198 273 - -
Gma08g01406 435 SMART G-patch_5 350 397 IPR000467 GO:0003676
Gma08g01406 435 SMART surpneu2 145 199 IPR000061 GO:0003723|GO:0006396
Gma08g01406 435 Pfam G-patch domain 353 396 IPR000467 GO:0003676
Gma08g01406 435 ProSiteProfiles SURP motif repeat profile. 147 190 IPR000061 GO:0003723|GO:0006396
Gma08g01406 435 MobiDBLite consensus disorder prediction 250 273 - -
Gma08g01406 435 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 435 - -
Gma08g01406 435 MobiDBLite consensus disorder prediction 23 38 - -
Gma08g01406 435 MobiDBLite consensus disorder prediction 42 81 - -
Gma08g01406 435 SUPERFAMILY Surp module (SWAP domain) 131 196 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01406 Gma-Chr8 11991908 11998951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01406 348 408 C2H2 Transcription Factor Family AT5G26610 48.387 6.87e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01406 K13096 - gmx:100813337 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02590 15 53998702 54003849 Gma08g01406 08 11991908 11998951 GST