Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01405 ATGAGTGTTATGTATAGTCCTGTTCTCAATTACTCAGATGTGGAGCATCAGCTAAGGAAAAACCAAGACATGGATTCAAGTATTGGACATCCACAACAACACTGTCACCAACCCAATTCTGGACTATTGAGGTATTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTCATTGACAACACCATTCATGGCTGTGTCAACGAGGAATCGTTCACAAGTGagaatcatcatcatcagcagcagcagcagcagcagcattatcttccatctacaagttcagaaatggagaccatgttatccaaattgcTACCATCCAACAATGGATGGAGCAATTCAGAAGCTTTGCAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAATAGGGGAATCTATTCCACAAGAGCCACCACAACAGAATGGTTATTCTTATGGTGGCTCTCAGTTGATTTACCAATCTCAGCAAATTCAAGGCTTGCCAAATGGTGGATCTTCCAGTGCTTCTGGCAGTGCTTTTGATGGCTCTTTTGGTGTGGTGCACTCCATGGCTTCAGAGGACTCCATTCAATCTAAAATGGGTATCAGGAATTGCTCCAATCTCTTTAGGCAAAAGAGTTCCCCTGCTGCATTTTTCTCCATTGAAAATGatcTTGCAGCATTGAGAGAAGTAGGAAGCTTTAAAGCCGATGATGTTTCAAATGGACTAGTTACTGCATCAACTGGTGGGTTGCATAGTTCTCATACTTTCTCATCTAGGCCATCTTCATGCTTGAAACGGTTGCCACAAATAGCCGAAAATGGAAATGAAAGCCTAGAAGAAAATTGTGACCAAAGTAGAAACCTAGTAAATGACAATGGTAGCTCAAAATGTTACATACCTAGCTTCACCAATGAATTATGGGAAAGTTCTGCATTCAATGCCCCAAAAACAGAGAATGAAGATGAAATCATGTTTTCCACTTCAAATATTTTGGAATCTCAGGAAGCAGATTTCAGCTTTCAAAATCTGGGTTTGACTCACCATTTGAGTCTACCTAGCTCTTCTACTAAGATGTCATCCATAGAAAAGTTTCTTCAGATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGTATTGCAGAGAGGGTAAGAAGAACAAGAATTAGTGAAAGAATCAAGAAACTGCAAGACCTTTTTCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTATATTAAGGACCTGCAGCAAAAAGTTAAGATACTCTCAGATTGTAAGGCAAAGTGCAAATGTACAAGTAATGAGAAGCATTACACTAGAACTTGTGCTTGA 1353 0.3777 MSVMYSPVLNYSDVEHQLRKNQDMDSSIGHPQQHCHQPNSGLLRYCSAPSSLLASLIDNTIHGCVNEESFTSENHHHQQQQQQQHYLPSTSSEMETMLSKLLPSNNGWSNSEALQEFGGKPVKQEIGESIPQEPPQQNGYSYGGSQLIYQSQQIQGLPNGGSSSASGSAFDGSFGVVHSMASEDSIQSKMGIRNCSNLFRQKSSPAAFFSIENDLAALREVGSFKADDVSNGLVTASTGGLHSSHTFSSRPSSCLKRLPQIAENGNESLEENCDQSRNLVNDNGSSKCYIPSFTNELWESSAFNAPKTENEDEIMFSTSNILESQEADFSFQNLGLTHHLSLPSSSTKMSSIEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLQQKVKILSDCKAKCKCTSNEKHYTRTCA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01405 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 422 IPR011598 GO:0046983
Gma08g01405 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 375 438 IPR036638 GO:0046983
Gma08g01405 450 MobiDBLite consensus disorder prediction 75 89 - -
Gma08g01405 450 Gene3D - 374 445 IPR036638 GO:0046983
Gma08g01405 450 Pfam Helix-loop-helix DNA-binding domain 378 423 IPR011598 GO:0046983
Gma08g01405 450 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 442 - -
Gma08g01405 450 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 442 - -
Gma08g01405 450 SMART finulus 378 428 IPR011598 GO:0046983
Gma08g01405 450 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01405 Gma-Chr8 11979177 11982363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01405 34 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.286 3.24e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g01405 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01405 - - gmx:100812802 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02589 15 53984184 53987264 Gma08g01405 08 11979177 11982363 GST