Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01397 ATGGCTTCTCTTCATTCTTCTTTCCTCCTTACATCAAATTTTCTTTCCCTCACAACCCCATCAAGTTCTTCCACTCACGTTCTCTTTCCCATGAGACTCTCCACGACCCACTTGCGACCCCTTCTTCTCACCACACGACACGGTTTCGGGAGACCACCCTTTGCCGCGGTGGCGGAACAGGCGGCCACCGCGACCGAGGCGTCCGCGAGGAGGCTCTACGTTGGCAACATTCCCCGCACCGTCACCAACGAAGAGCTTGCCAAGATTGTTCAAGAACATGGTGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGCCGCTTTGCATTTGTTACGATGAAAACTGTTGAGGATGCAACTGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGACGTGAGGTCAAAGTAAACGTAACGGAAAAACCTTTATCAACACCAGATTTGCCTTTACTCCAAGCTGAGGAATCTGAATTTATTGACAGTCCCCACAAGGTGTATGTGGGAAATCTGGCCAAAACAGTAACAACTGATACTCTTAAAAACTTTTTTTCTGAGAAGGGAAAAGTTCTTAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGATATGGGTTTGTTACTTTTTCGTCAGAAGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGCCAAACAATCCGTGTAAACAAGGCATAG 741 0.4642 MASLHSSFLLTSNFLSLTTPSSSSTHVLFPMRLSTTHLRPLLLTTRHGFGRPPFAAVAEQAATATEASARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEKLNGTEIGGREVKVNVTEKPLSTPDLPLLQAEESEFIDSPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRVNKA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01397 246 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 246 - -
Gma08g01397 246 SMART rrm2_1 71 144 IPR003954 GO:0003676
Gma08g01397 246 SMART rrm2_1 171 244 IPR003954 GO:0003676
Gma08g01397 246 SUPERFAMILY RNA-binding domain, RBD 62 148 IPR035979 GO:0003676
Gma08g01397 246 SUPERFAMILY RNA-binding domain, RBD 165 246 IPR035979 GO:0003676
Gma08g01397 246 Gene3D - 158 246 IPR012677 -
Gma08g01397 246 PANTHER OS02G0815200 PROTEIN 1 246 - -
Gma08g01397 246 Gene3D - 53 153 IPR012677 -
Gma08g01397 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Gma08g01397 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 246 IPR000504 GO:0003723
Gma08g01397 246 SMART rrm1_1 71 144 IPR000504 GO:0003723
Gma08g01397 246 SMART rrm1_1 171 244 IPR000504 GO:0003723
Gma08g01397 246 CDD RRM_HP0827_like 71 148 - -
Gma08g01397 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 142 IPR000504 GO:0003723
Gma08g01397 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 242 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01397 Gma-Chr8 11906923 11909498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01397 72 246 Eukaryotic Initiation Factors Gene Family AT2G23350 32.584 3.74e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01397 K13126 - gmx:100811197 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02582 15 53918629 53923160 Gma08g01397 08 11906923 11909498 GST