Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01354 ATGGTTAGAGACGATCTATGCATCACCGTTCCCAGCTTCTTCCGCTGCCCTATCTCCCTCGACGTCATGAAATCCCCTGTCAGCCTCTGCACCGGCGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCACTGATTTCGttcccaaccgaaccttacagaggctcatccagatctggtctGACTCGGTCACTCACCGAGTCGACTCGCCCGACTCACCTACCTCCACCGAGTCCCAATCACTCCTCTCCAAGGACCACATCCTCGTCGCCATCTCCGATTTGCACACTCGCAGCGACAATCGGTTCAACTCGCTCTCGAAAATTGCTCGTTTCGCACAAGATTCCGAGGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTCGTGCCGGTGCTGGTTGGCTTCCTCGACAATGTCAATGGCGGCGTCGAATTTCTCCAACAGGTTGTTACGGCGTTGGATTTGGTTATCAGCAAAATGGAAGATCGCGAGGGGATGAAAAACTTGATACTGAAGAGGCAAGGCGAGGGAGAAAAACAGAGCGTGGATTCTCTGCTTCTGGTTCTGCAACAAGGAAGCCATGCCTCAAAAATCGCATCGGCTAGGGTTTTGAAATCAGTCGCCGTAGACGCGGAATCGAAGCTGCTGTTAGCGGAGAAGGAAGGTTTAGTATCCGAATTGCTGAATCTAATCACGCCGGAGAAAGATCCTGATCTTATTGAGAACTGTTTATCGTGTCTGGTTTCAATTTCGACGCCGAGACGGAGCAAGATGAAGCTGGTGCGTCTCGGAGCGGTGAAGGTGTTCTCGAACCTTCTTTCGGCTCCGGGCCTGAGCGTGTCGGTGAAGGAGAAGGTGCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTCGGAGATTTGCGAGGATTCGGCGTGCGTTTCGGCGATAGTGGACAAGGTGCTGAAAGTGTCGAGCGTGGCGACGGAACACGCCGTTACGACGCTGTGGAGTGTGTGTTATCTGTTTAGGGATCAGAAGGCGCAAGAGGCCGTTACCAAGGCTAACGGATTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGCTCACCGCAAGTGCGTCAAATGTCTTCGGATTTGCTTAAGATATTTCGGGTTAATTCTAAGTCGTGTCTTTCTTCTTATGACACCAAAACCACTCATATTATGCCCTTTTGA 1257 0.5036 MVRDDLCITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTTDFVPNRTLQRLIQIWSDSVTHRVDSPDSPTSTESQSLLSKDHILVAISDLHTRSDNRFNSLSKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLQQVVTALDLVISKMEDREGMKNLILKRQGEGEKQSVDSLLLVLQQGSHASKIASARVLKSVAVDAESKLLLAEKEGLVSELLNLITPEKDPDLIENCLSCLVSISTPRRSKMKLVRLGAVKVFSNLLSAPGLSVSVKEKVLKLVETVSSTKEGRSEICEDSACVSAIVDKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKIFRVNSKSCLSSYDTKTTHIMPF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01354 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Gma08g01354 418 SUPERFAMILY ARM repeat 114 399 IPR016024 -
Gma08g01354 418 Gene3D - 96 413 IPR011989 -
Gma08g01354 418 CDD RING-Ubox_PUB 14 56 IPR045210 -
Gma08g01354 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 86 IPR013083 -
Gma08g01354 418 SUPERFAMILY RING/U-box 6 77 - -
Gma08g01354 418 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Gma08g01354 418 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Gma08g01354 418 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 418 - -
Gma08g01354 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01354 Gma-Chr8 11478596 11479852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01354 1 418 U-box Gene Family AT5G64660 54.167 4.55e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01354 - - gmx:100799627 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01868 05 40137371 40138969 Gma08g01354 08 11478596 11479852 GST
Gma08g01354 08 11478596 11479852 Gma06g01344 06 12645087 12646598 PCT
Gma06g01344 06 12645087 12646598 Gma08g01354 08 11478596 11479852 PCT