Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01342 ATGGATTCGGAGGATTTCCGATCCATTCTGGAGAGCGCGGGCGTGGACGTTTGGGCCCTCATGGACGCGGCCATCGCGGTGGCCTCCGCCGACCACGCTCACGAGTTGAAGCGCCGGAGAGATGGAATCGTTGAGCGCCTTTACGCGGCCAGTTCACCGCCGCCGCTGTGTCGGAACTGCGACGCCGGCGACGGGGGAGAAATCAGGACGCAGAGCAGTCCCTCCGCGGAGGAGGAAAAGGATCCCTACGGAGGCTTGTTCGACGACGAGCAACGGAAGATTCTCGACATTAAAGAGCAACTCGAAGACCCTCACCAGTCCGAAGATTCGTTGGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATTACATTTCAAGCGTTAGAAGAGACTGACATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGATGTTAAGAGATTGGTCAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGGCCCCGGGAGAACCGGGTACTGCTGTCATGGCTGATGAGGACTCGCCTCAGCAGAGAATCCTACAAAATGGGCATCGTCAGATTCCTGATTTTGCATACTCACCAAATCCACACTATGGGAGTTTTGGGTCAGAGCGCAACAATATTGAAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCTTCAAAACCATCGCCATCAGTCACTACTCCTGCTCCTCCTACTCAAAACAGACAGAGAGAAAGCAATTTTGACCCGGATAGATTTGCTTCAGCCAGAAAACGGCTTCAAGAGAACTACAAAGATGCTGCAAATGCCAAAAAGCAAAGAACGATTCAAGTGATGGATCTCCATGAGTTACCAAAACCCAAGAATGCCTTCCTTGGAAAAAACAAAGGCGGCACTGGTCAGGGAAGGCACTGGTGA 945 0.5111 MDSEDFRSILESAGVDVWALMDAAIAVASADHAHELKRRRDGIVERLYAASSPPPLCRNCDAGDGGEIRTQSSPSAEEEKDPYGGLFDDEQRKILDIKEQLEDPHQSEDSLVELLQNLADMDITFQALEETDIGRHVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKAPGEPGTAVMADEDSPQQRILQNGHRQIPDFAYSPNPHYGSFGSERNNIEAERKPKAIPRKEAPSKPSPSVTTPAPPTQNRQRESNFDPDRFASARKRLQENYKDAANAKKQRTIQVMDLHELPKPKNAFLGKNKGGTGQGRHW 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01342 314 MobiDBLite consensus disorder prediction 254 278 - -
Gma08g01342 314 ProSiteProfiles TFIIS N-terminal domain profile. 89 166 IPR017923 -
Gma08g01342 314 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 314 - -
Gma08g01342 314 SMART TFS2_5 94 165 IPR003617 GO:0005634
Gma08g01342 314 MobiDBLite consensus disorder prediction 55 85 - -
Gma08g01342 314 Pfam TFIIS helical bundle-like domain 114 163 IPR017923 -
Gma08g01342 314 Coils Coil 111 131 - -
Gma08g01342 314 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 173 IPR035441 -
Gma08g01342 314 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 314 IPR044790 -
Gma08g01342 314 MobiDBLite consensus disorder prediction 198 314 - -
Gma08g01342 314 CDD TFIIS_I 94 164 - -
Gma08g01342 314 MobiDBLite consensus disorder prediction 217 231 - -
Gma08g01342 314 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 174 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01342 Gma-Chr8 11356006 11357893 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gma08g01342 Med26 6.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01342 - - gmx:100796457 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01850 05 39994549 39999040 Gma08g01342 08 11356006 11357893 GST
Gma08g01342 08 11356006 11357893 Gma04g02082 04 51310363 51312292 PCT
Gma08g01342 08 11356006 11357893 Gma06g01332 06 12521619 12523614 PCT
Gma04g02082 04 51310363 51312292 Gma08g01342 08 11356006 11357893 PCT
Gma06g01332 06 12521619 12523614 Gma08g01342 08 11356006 11357893 PCT