Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01339 atgagcgtggaagatcttcctgggAAAGAGGTAAACGTGCTGAAGGGTCACGAGGGTGGCGTGTTAGCCGCGAGGTTCAACGGCGATGGCAATTATGTTCTGAGTTGCGGCAAAGACCGTACCATACGCCTTTGGAATCCTCACCGTGGCATCCATATCAAGACCTATAAATCCCACGCTCGCGAAGTCCGCGATGTCCACGTCACACAGGACAACTCCAAGCTATGTTCCTGTGGTGGAGATCGACAAATATTTTATTGGGACGTTGCAACTGGACGTGTAATTAGGAAATTTCGTGGCCATGATGGTGAGGTAAATGGTGTCAAATTCAATGAGTATTCATCTGTTGTAGTCTCTGCTGGCTATGATCAATCATTGCGTGCTTGGGACTGCAGATCCCACAGCACAGAGCCAATTCAGATTATTGACACATTTGCGGATAGTGTGATGTCTGTTTGTTTAACAAAAACTGAAATTATTGGAGGAAGTGTTGATGGAACTGTTCGAACATTTGACATTCGTATTGGCAGAGAAACATCTGATAATTTAGGGCAACCTGTCAACTGTGTATCAATGTCAAATGATGGTAACTGCATTCTAGCCGGTTGCTTAGACTCTACATTGCGTCTTTTGGACAGGTATTTTTATTGCATTTTTGGAAAAATTACTATGTGTCTGTATCCCTGCAATTTTCATAGTCCTTTCTTGTACAGGTCGACAGGTGAACTGTTACAAGAATATAAAGGACACACTAATAAGTCTTACAAATTGGATTGCTGCCTTACCAATACGGATGCTCATGTAACTGGTGTCTCTGAGGATGGCTTCATTTATTTCTGGGATCTTGTAGATGCATCTGTTGTTTCAAGATTCAAGGCTCATACCTCAGTGGTAACAAGTGTTAGTTATCATCCAAAGGAAAACTGCATGGTAACTTCTTCTGTGGATGGCACCATTAGAATGGTAAACGCAAGTTGGAAAACTAGTGGCTGCGATGCTCTTATGTAG 1008 0.4157 MSVEDLPGKEVNVLKGHEGGVLAARFNGDGNYVLSCGKDRTIRLWNPHRGIHIKTYKSHAREVRDVHVTQDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDIRIGRETSDNLGQPVNCVSMSNDGNCILAGCLDSTLRLLDRYFYCIFGKITMCLYPCNFHSPFLYRSTGELLQEYKGHTNKSYKLDCCLTNTDAHVTGVSEDGFIYFWDLVDASVVSRFKAHTSVVTSVSYHPKENCMVTSSVDGTIRMVNASWKTSGCDALM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01339 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 93 - -
Gma08g01339 335 SMART WD40_4 91 130 IPR001680 GO:0005515
Gma08g01339 335 SMART WD40_4 240 281 IPR001680 GO:0005515
Gma08g01339 335 SMART WD40_4 176 212 IPR001680 GO:0005515
Gma08g01339 335 SMART WD40_4 7 46 IPR001680 GO:0005515
Gma08g01339 335 SMART WD40_4 49 88 IPR001680 GO:0005515
Gma08g01339 335 SMART WD40_4 284 323 IPR001680 GO:0005515
Gma08g01339 335 SMART WD40_4 135 172 IPR001680 GO:0005515
Gma08g01339 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Gma08g01339 335 Pfam WD domain, G-beta repeat 93 130 IPR001680 GO:0005515
Gma08g01339 335 Pfam WD domain, G-beta repeat 185 210 IPR001680 GO:0005515
Gma08g01339 335 Pfam WD domain, G-beta repeat 8 46 IPR001680 GO:0005515
Gma08g01339 335 Pfam WD domain, G-beta repeat 53 88 IPR001680 GO:0005515
Gma08g01339 335 Pfam WD domain, G-beta repeat 289 321 IPR001680 GO:0005515
Gma08g01339 335 Pfam WD domain, G-beta repeat 241 281 IPR001680 GO:0005515
Gma08g01339 335 CDD WD40 10 320 - -
Gma08g01339 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 321 - -
Gma08g01339 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 130 IPR001680 GO:0005515
Gma08g01339 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 321 IPR001680 GO:0005515
Gma08g01339 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Gma08g01339 335 PANTHER WD40 REPEAT PROTEIN 6 322 - -
Gma08g01339 335 Gene3D - 8 321 IPR015943 GO:0005515
Gma08g01339 335 SUPERFAMILY WD40 repeat-like 6 321 IPR036322 GO:0005515
Gma08g01339 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Gma08g01339 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01339 Gma-Chr8 11332933 11336445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01339 13 321 Eukaryotic Initiation Factors Gene Family AT2G46290 21.687 1.82e-14 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01847 05 39970302 39973787 Gma08g01339 08 11332933 11336445 GST