Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01303 ATGATGCGAAGCCAGCATCGACTACTACTAGGAATATCCCACTTCAAATTCCTCAACAAAGACAATGTGAGCCAAACTTTGCACTTCTCCACTCTGTTACCTCCTTTTCTTCAACCACATGATTCTCCAATCCTTATACAAAGGAAAATTGGTCGTGAATTGGGCAAGTTATTGCAATTGCCATCCCCAAACATTCTCACTTCTCATTACTATAAGAAAATCCATGCCCACATTGTGGTGTTGGGTTTTCACCAACATGATGTCTTCCTTGTTAACACTCTCTTGCACGCATACTCAAAAATGAACCTTCAAAGTGATGCACAGAAGCTGTTCGATACTATGCCTCATAGGAACCTAGTTACTTGGTCCTCCATGGTTTCTATGTACACTCAACATGGTTACAGTGTGGAAGCACTGTTGTTGTTCTGCCGGTTCATGCGAAGTTGCAGTGAGAAACCAAATGAATACATTTTAGCCAGTGTTGTTAGAGCTTGTACACAATTGGGTAATCTCAGTCAAGCTCTGCAGCTGCATGGTTTTGTTGTTAAGGGTGGGTTTGTTCAGGATGTATATGTGGGTACGTCTTTGATTGACTTTTATGCCAAGCGTGGGTATGTTGATGAAGCAAGGTTGATTTTTGATGGCCTAAAAGTTAAAACCACTGTCACATGGACTGCAATTATAGCAGGGTATGCAAAACTTGGAAGAAGTGAAGTATCCTTGAAGTTGTTCAACCAAATGAGAGAGGGTGATGTCTATCCAGACAGATATGTGATTTCTAGTGTTTTGAGTGCGTGCTCGATGCTTGAGTTTCTTGAAGGGGGGAAGCAAATTCATGGATATGTGTTAAGGAGGGGCTTTGACATGGATGTTTCAGTGGTCAATGGAATTATAGATTTTTATTTGAAATGTCACAAAGTGAAGACAGGTCGGAAGTTATTCAATCGGCTGGTGGATAAAGATGTTGTTTCGTGGACCACAATGATTGCTGGTTGCATGCAAAATTCATTCCACGGGGATGCCATGGATCTGTTTGTTGAAATGGTTAGAAAGGGTTGGAAGCCTGATGCATTTGGTTGCACTAGTGTTCTCAATTCATGTGGTTCACTGCAGgccctacaaaagggaagacaagtgcacgcttatgctatcaaggtcaatattgacaatgatgattttgtaaaaaatggtttgattgacatTTTTGCTGGAAGTGCTCTAATAGATGTTTATTCAAAATGCTCATGTGTTGGGGATGCAAGACTAGTTTTTGAGGAGATATATGACAGAGACATTGTAGTATGGAATGCGATGTTTTCTGGTTACAGCCAACAACTGGAAAATGAGGAGTCTCTCAAACTTTACAAAGATCTTCAAATGTCAAGGCTAAAACCCAACGAATTCACTTTTGCTGCTGTAATCGCAGCAGCAAGTAACATAGCAAGTCTGCGACATGGTCAGCAGTTTCACAACCAGGAAGAAGCAGCAATGGCGCCGAAGATAACACGCAAGGTCAGCAGAAACCCCGAATTGATAAGGGGAATCGGAAAGTACTCGAGGTCGCAGATGTACCACAAGAGGGGCATTTGGGCTATCAAGGCCAAAAACGGTGGCGTTTTACCTCGCCACGACCCCAAACCCAAACCTGAAACTCCCACTGAAAAACCACCCAAATTTTACCCCGCTGATGATGTCAAGAAACCCCTTGTCAACAAGCACAAACCCAAACCAGCTAAGCTCAGGGCTAGCATTACCCCCGGAACAGTGTTGATTCTTCTTGCTGGTAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAGCAGCTACCTTCTGGGTTGCTTCTTGTAACAGGTCCTTTCAAGGTTAATGGAGTTCCTTTGAGACGTGTGAATCAGGCCTATGTTATTGGCACATCAACCAAAGTAGATGTCTCTGCTGTTAATGTCAACAACTTTGATGACAAATACTTTGCGAAGGAAGCCCAGAGGAAGAAGAAGAAGGGAGAAGGGGAGTTCTTTGAGGCAGAGAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTTGACTCTGCGTTGATAAAAGCCATCGAGAGTGTTCCAGACTTGAAGACTTATCTGGGTGCCAGGTTTTCTCTAAAGGCTGGCGTGAAACCTCATGAGCTAGTCTTCTAG 2187 0.4147 MMRSQHRLLLGISHFKFLNKDNVSQTLHFSTLLPPFLQPHDSPILIQRKIGRELGKLLQLPSPNILTSHYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDIFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQEEAAMAPKITRKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPETPTEKPPKFYPADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKVNGVPLRRVNQAYVIGTSTKVDVSAVNVNNFDDKYFAKEAQRKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDSALIKAIESVPDLKTYLGARFSLKAGVKPHELVF 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01303 728 Gene3D Tetratricopeptide repeat domain 72 169 IPR011990 GO:0005515
Gma08g01303 728 Gene3D Tetratricopeptide repeat domain 278 384 IPR011990 GO:0005515
Gma08g01303 728 Gene3D Tetratricopeptide repeat domain 393 497 IPR011990 GO:0005515
Gma08g01303 728 Coils Coil 657 677 - -
Gma08g01303 728 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Gma08g01303 728 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Gma08g01303 728 CDD KOW_RPL6 576 728 IPR041997 -
Gma08g01303 728 Pfam PPR repeat 91 118 IPR002885 -
Gma08g01303 728 Pfam PPR repeat 194 217 IPR002885 -
Gma08g01303 728 Pfam PPR repeat 120 147 IPR002885 -
Gma08g01303 728 MobiDBLite consensus disorder prediction 539 571 - -
Gma08g01303 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Gma08g01303 728 PANTHER OS08G0340900 PROTEIN 71 232 - -
Gma08g01303 728 PANTHER OS08G0340900 PROTEIN 399 492 - -
Gma08g01303 728 PANTHER OS08G0340900 PROTEIN 200 403 - -
Gma08g01303 728 Pfam Ribosomal protein L6e 621 728 IPR000915 GO:0003735|GO:0005840|GO:0006412
Gma08g01303 728 PANTHER OS07G0578800 PROTEIN-RELATED 71 232 IPR045215 GO:0003723|GO:0009451
Gma08g01303 728 PANTHER OS07G0578800 PROTEIN-RELATED 399 492 IPR045215 GO:0003723|GO:0009451
Gma08g01303 728 PANTHER OS07G0578800 PROTEIN-RELATED 200 403 IPR045215 GO:0003723|GO:0009451
Gma08g01303 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Gma08g01303 728 SUPERFAMILY Translation proteins SH3-like domain 582 668 IPR008991 -
Gma08g01303 728 Gene3D Tetratricopeptide repeat domain 170 277 IPR011990 GO:0005515
Gma08g01303 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 153 IPR002885 -
Gma08g01303 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Gma08g01303 728 MobiDBLite consensus disorder prediction 536 577 - -
Gma08g01303 728 Pfam Ribosomal protein L6, N-terminal domain 503 556 IPR005568 GO:0003735|GO:0005840|GO:0006412
Gma08g01303 728 Pfam PPR repeat family 431 476 IPR002885 -
Gma08g01303 728 Pfam PPR repeat family 320 367 IPR002885 -
Gma08g01303 728 Pfam PPR repeat family 220 266 IPR002885 -
Gma08g01303 728 Gene3D - 582 665 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01303 Gma-Chr8 11061691 11070234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01303 502 728 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 81.498 6.58e-115 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01303 - - gmx:100798248 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01818 05 39715349 39716975 Gma08g01303 08 11061691 11070234 GST