Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01289 ATGACCTCTGTGTGTGAGTTCTTGTATCAGCTTTATGCCAAAACAATAGTTCTATTAACCTACATGCTCATAGAACTTATCCTCATCATTCAGTACCTTAAGTCAGATACACGTCCAATTTCAACCGCCCAATACCTCAATTTCATTGAAGAGAAGAACCCCACAATTCAGTTCACTAGAAGATTGAAGGCAGAGAACATAGATTGCAGGGTGTGCTTATCTGAATTCCAAGAAGGGGAGAAAGTGAGGAATCTCAATTGCAGACACACATTTCACAAGGATTGTTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGTCCACTTTGCAGGAACAAGGTGCTCCCAGATGATGTTGTGGCCAACCACAACTTGCTTCAAAATCAGGCAGAATATGATGGGAATGATGACCAACTTATCTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCACAGATATCTCTGA 471 0.414 MTSVCEFLYQLYAKTIVLLTYMLIELILIIQYLKSDTRPISTAQYLNFIEEKNPTIQFTRRLKAENIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRNKVLPDDVVANHNLLQNQAEYDGNDDQLIFLLSALRGGSTLHRYL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01289 156 Pfam Ring finger domain 68 111 IPR001841 -
Gma08g01289 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 116 IPR013083 -
Gma08g01289 156 SMART ring_2 69 110 IPR001841 -
Gma08g01289 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 151 - -
Gma08g01289 156 CDD mRING-H2-C3H2C2D_ZSWM2 69 111 - -
Gma08g01289 156 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Gma08g01289 156 PANTHER - 1 151 - -
Gma08g01289 156 SUPERFAMILY RING/U-box 48 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01289 Gma-Chr8 10936180 10936650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01289 68 121 C3H Transcription Factor Family AT1G15100 59.259 1.28e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01289 K16282 - gmx:102669811 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01798 05 39590230 39590706 Gma08g01289 08 10936180 10936650 GST
Gma08g01289 08 10936180 10936650 Gma18g00189 18 1525004 1526040 PCT
Gma08g01289 08 10936180 10936650 Gma11g02386 11 39239307 39240304 PCT