Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01246 ATGGCTGAGGCCAGACTCTACGCTCCCCCCTCTCAATTGGATATTAAGCAAATTATTTTAGAAGCACAGCATCGATGGCTACGTCCGGCTGAAATTTGTGCAATTCTCGGTAATTATAAGAAGTTTCGAATTGCTCCAGAACCTGCACATATGCCACCAAGTGGTTCACTTTTCTTATTTGATCGGAAGGTGCTGAGACACTTCAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACAGTGAGAGAAGCTCATGAGAGACTAAAGGCTGGAAGTGTGGATGTGTTGCATTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGCACGTATTGGTTGCTTGAAGAGGAACTCTCTCACATTGTTCTCGTCCATTATCGACAAGTGAAGGGAACCAAGGCGAATTTTACAAGTGCTAAAGAAAATGAAGAATCTCTTCCTTATGCTCAACAAACTGATAAAATTATGCCCCAAACAGAGATGGACACTTCTTTATCATCTACTCTTCATCCACATAGTTACCAGGTTCCTTCAAAAACTGTCGATACAAGCATGAACAGTGCCCAAACATCAGAATATGAAGAAGCTGAATCTGCATTCAATAACCATGCAAGTTCTGAGTTTTATTCTTTCCTCGAGTTACAACGCCCTGTTGAGAAGATTTCACCTCAACCTGCTGATTTTTATTCTCCTCGGCCACTCATAAATGATCAAGAGAAGTTACCTATTATTCCTGGGGTGAATTATATCTCACTCACTCAAGACAATAAAAACAAAGACATTCTTAATGCTGGATTGACATATGAATCCCCAAAACCCCTTGGCTTTTCCTCATGGGAAGGTATCTTAGAAAATAATGCTGGAAGTCAACATGTGCATTTTCAGCCTTTATTTCCTGGAACACAGCCTGATAACATGGGAATCAATAGCAATTTTTCTCAAGGAGAAGAGATAATGGTGCCATATTTGACCACCAGCATTGCTAAGCAGCATGAGAATGGAAGTATCATTAAAGCTGAAGGAAATTGGCAGGTTTATGATGTTGATTCTTTACGCATGTCCAGTTGGCCTATAGATAGTGCTTATTCAGGCTCAACATGTGAGGTAAGTTGTAGCAACTGTGAGCAGGAAGTTAATGATGTTGATTTTCAGAAATCCTTGGAACAGTGTCTTCTACATTCACACAAACAAAACAAGGTTCTCATGCAAAATGATCTTCAAGAAAAACTTTTGAATGAAAAAGAAAAGATAAAATCAAATCTAGAGGCCTATGGAATAGAAGACACATATTTATCTTTTAAAAGGACTCTGTTAGATGGACCTCCAGCTGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAGCTTGGAGATGTGGAAGAATCAAATAAACCATCCACTTCTGGTGGTTATTGGGATACAGTTGAAACTGAAAATGAGGTTGGCAACACAACTATTCCTTCCCAAGGGCACCTGGACACCTATGTATTGGATCCATCTGTTTCCCATGATCAGCTTTTTAGCATTATTGACTATTCCCCAAGCTGGGCATTTGAAGGGTCAGAAATTAAGGTTATCATTTCTGGAGAATTCCTAAGAAGTCAACATGAAGCAGAACAATGTAAGTGGTCATGCATGTTTGGTGAGGTAGAAGTGCCAGCAGTGATCATTGCAAAAGGTGTTCTTTGTTGTCATACACCTCCACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTGAGAGAATTTGATTTCCAAGTCCACTATACTCCAGAAGACACTACAGGTGAGAATAGAGGAAGCACTTTTGATACTTTTAGTATCCGATTTGGAGAACTTTTGTCCCTGGGGCATGCCTTTCCTCAGAATTCAGATTCAATTAGTGTAAGTGAGAAATCTCAACTGAGAAGTAAAATCAATTCTTTATTGAGGGAGGATGATGATGATTGGGACAAGCTACTAAAACTTACTCAAGAGAAAGATTTTTCTCCAGAAAATTTACGGGAGCAGCTGCTTCAAAATCTTCTGAAAGATAAGTTACATGCATGGCTCCTTCAGAAAATAACTGAAGAAGGGAAAGGCCCTAATGTATTAGATGAGGGTGGCCAAGGTGTGCTTCATTTTGCAGCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTGAATGTGAACTTTCGTGATGTAAATGGATGGACTTCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGCACAGTTGCTTTCCTCATCTCTCTCGGCGCAGCACCCGGAGCACTGACTGATCCATGTCCAGAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCAGGGTATCTTGCTGAGTCTTCACTAAGTGCACACCTCACAACTCTCGATTTGAACAGGGACGCGGGAGAAAATTCCGGAGCAAAAGTAGTCCAAAGACTCCAAAACATTGCTCAAGTTAATGATCTTGATGGTTTATCATATGAACTGTCATTGAAAGATTCACTGGCTGCAGTGTGTAACGCCACCCAAGCCGCAGCTCGTATTCATCAAGTTTTCAGAATGCAATCATTTCAGAGAAAACAACTGAAGGAATATGATGATGACAAACTTGGATTATCTGATGAGCGTGCTCTTTCACTCATAAAAATGAATGTAAAATCACACAAGTCTGGACCACGTGACGAGCCTGTCCATGCTGCTGCAATACGAATCCAAAACAAATTCCGCAGTTGGAAGGGAAGAAGAGAATTTTTAATGATTCGACAACGCATAGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTCAGGAAAAGCTGTGGGAAGATAATTTGGTCCGTTGGAATCTTGGAGAAGGTTATTTTACGTTGGCGTCGAAAAGGTAGTGGCTTGCGTGGATTTAAACCGGAGGCCAATTCTGAGGGAACTATGATACAAGATGTATCTTCAACAGATGATGACTATGATGTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGGTTGCAGAAAGCCCTAGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGAGAGCAGTTCTAACAATTCAGAAGAACCGAGAGAATTCGGTGACCTCAATGATCTTGAAGCATTGTTGGACGAAGATATTTTCATGCCTACAGCAACTTAA 3309 0.4116 MAEARLYAPPSQLDIKQIILEAQHRWLRPAEICAILGNYKKFRIAPEPAHMPPSGSLFLFDRKVLRHFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWLLEEELSHIVLVHYRQVKGTKANFTSAKENEESLPYAQQTDKIMPQTEMDTSLSSTLHPHSYQVPSKTVDTSMNSAQTSEYEEAESAFNNHASSEFYSFLELQRPVEKISPQPADFYSPRPLINDQEKLPIIPGVNYISLTQDNKNKDILNAGLTYESPKPLGFSSWEGILENNAGSQHVHFQPLFPGTQPDNMGINSNFSQGEEIMVPYLTTSIAKQHENGSIIKAEGNWQVYDVDSLRMSSWPIDSAYSGSTCEVSCSNCEQEVNDVDFQKSLEQCLLHSHKQNKVLMQNDLQEKLLNEKEKIKSNLEAYGIEDTYLSFKRTLLDGPPAEEGLKKLDSFNQWMSKELGDVEESNKPSTSGGYWDTVETENEVGNTTIPSQGHLDTYVLDPSVSHDQLFSIIDYSPSWAFEGSEIKVIISGEFLRSQHEAEQCKWSCMFGEVEVPAVIIAKGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVHYTPEDTTGENRGSTFDTFSIRFGELLSLGHAFPQNSDSISVSEKSQLRSKINSLLREDDDDWDKLLKLTQEKDFSPENLREQLLQNLLKDKLHAWLLQKITEEGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGWTSLHWAAFCGRERTVAFLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESSLSAHLTTLDLNRDAGENSGAKVVQRLQNIAQVNDLDGLSYELSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQLKEYDDDKLGLSDERALSLIKMNVKSHKSGPRDEPVHAAAIRIQNKFRSWKGRREFLMIRQRIVKIQAHVRGHQVRKSCGKIIWSVGILEKVILRWRRKGSGLRGFKPEANSEGTMIQDVSSTDDDYDVLKEGRKQTEQRLQKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHESSSNNSEEPREFGDLNDLEALLDEDIFMPTAT 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01246 1102 ProSiteProfiles Ankyrin repeat profile. 754 786 IPR002110 GO:0005515
Gma08g01246 1102 Gene3D Immunoglobulins 513 609 IPR013783 -
Gma08g01246 1102 SUPERFAMILY Ankyrin repeat 699 815 IPR036770 -
Gma08g01246 1102 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gma08g01246 1102 ProSiteProfiles Ankyrin repeat region circular profile. 754 779 - -
Gma08g01246 1102 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gma08g01246 1102 MobiDBLite consensus disorder prediction 1065 1085 - -
Gma08g01246 1102 MobiDBLite consensus disorder prediction 1071 1085 - -
Gma08g01246 1102 Gene3D - 925 973 - -
Gma08g01246 1102 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 198 - -
Gma08g01246 1102 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 343 1066 - -
Gma08g01246 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 976 IPR027417 -
Gma08g01246 1102 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 343 1066 - -
Gma08g01246 1102 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 1 198 - -
Gma08g01246 1102 Coils Coil 1018 1038 - -
Gma08g01246 1102 Gene3D - 677 844 IPR036770 -
Gma08g01246 1102 ProSiteProfiles IQ motif profile. 928 956 IPR000048 GO:0005515
Gma08g01246 1102 Coils Coil 413 433 - -
Gma08g01246 1102 Pfam Ankyrin repeats (3 copies) 726 822 IPR002110 GO:0005515
Gma08g01246 1102 SUPERFAMILY E set domains 520 605 IPR014756 -
Gma08g01246 1102 SMART iq_5 926 948 IPR000048 GO:0005515
Gma08g01246 1102 SMART iq_5 949 971 IPR000048 GO:0005515
Gma08g01246 1102 Pfam IPT/TIG domain 520 595 IPR002909 -
Gma08g01246 1102 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gma08g01246 1102 SMART ANK_2a 754 783 IPR002110 GO:0005515
Gma08g01246 1102 SMART ANK_2a 793 822 IPR002110 GO:0005515
Gma08g01246 1102 Pfam IQ calmodulin-binding motif 928 947 IPR000048 GO:0005515
Gma08g01246 1102 Pfam IQ calmodulin-binding motif 952 969 IPR000048 GO:0005515
Gma08g01246 1102 ProSiteProfiles IQ motif profile. 950 974 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01246 Gma-Chr8 10590413 10597856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01246 1 1084 CAMTA Transcription Factor Family AT5G64220 46.368 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gma08g01246 Ank_2 2.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01246 K21596 - gmx:100783055 2191