Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01242 ATGCCAAACGCCACTGAACAATTCTCAAACATCAACAGCATCGAGTCCCTCCATGTTTCCCTTCGCAACCTCTCCCAACTCAGCACCCGAATGGATTCCGTCCAAAGCTTCGTCTCCCAATCGATCCAATCCCACACTCTCCTCACTCACCACCAAATGAACATAGTCTCCAACGAGATCCTAACCGCCATTCGCCACGTCATCACCAACGGCGTCGCCCTTGTCGCCGCCTCGGAAAACGCGCTCCCTCTCTCGGAGACTCCAACGTTGGACTCCCCGAACAACAACGACGACGACAACGTGGTGGAGCTCGATGCCATGGAGCTGCTGGCCAAGCACCTTCACTTCTGCGAGGTGTGTGGGAAAGGCTTCACGCGCGACGCCAACCTGAGAATGCACATGCGCGCGCACGGGGACGAGTTCAAGACCCCGGAAGCGTTGGCGAATAAAGCCCGTGGAGAAACGCGCTTGAAGGCGACGCGGTTTTCGTGCCCCTTGGAGGGATGCAACCGTAACAAGACGCACAAGAAATTCAGGGCGTTGAAGTCAGTGTTCTGTCTGAGGAACCACTTCAAGAGGAGCCACTGTCCCAAGACGCTGTTGTGCGAGCGGTGTCGGAAGAAGAGCTTCGCGGTGCTGTCGGACTTGAGGAGCCACGTCAAGCAGTGTCGGGGAGAGGCCACGTGGAAGTGCTCGTGCGGGACCACGTTTTCGAGGAAGGACAAGCTGCTCGGACACGTGGCGCTGTTCGAGGGGCATTCGCCGATGCTTGGAGAGGAGAGAGATACGGTGGTGGCGGCGGCCGCGGAAGGGTTACCTGAAGGGTTCTTTGATGGATTGGATGAATTTGGATTTGGATCCATTCAAAACAACTCTTCACAGGAGGAACACTTGGCCTTGGGGCTTCCCACAAATAATTTAGATGCATGGGAATTTTCTTTTTCTAATTTAATCTAA 957 0.5517 MPNATEQFSNINSIESLHVSLRNLSQLSTRMDSVQSFVSQSIQSHTLLTHHQMNIVSNEILTAIRHVITNGVALVAASENALPLSETPTLDSPNNNDDDNVVELDAMELLAKHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPEALANKARGETRLKATRFSCPLEGCNRNKTHKKFRALKSVFCLRNHFKRSHCPKTLLCERCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLLGHVALFEGHSPMLGEERDTVVAAAAEGLPEGFFDGLDEFGFGSIQNNSSQEEHLALGLPTNNLDAWEFSFSNLI 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01242 318 SUPERFAMILY beta-beta-alpha zinc fingers 113 141 IPR036236 -
Gma08g01242 318 Pfam Zinc-finger of C2H2 type 116 135 - -
Gma08g01242 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Gma08g01242 318 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 267 - -
Gma08g01242 318 SMART c2h2final6 115 137 IPR013087 -
Gma08g01242 318 SMART c2h2final6 162 195 IPR013087 -
Gma08g01242 318 Gene3D Classic Zinc Finger 106 167 - -
Gma08g01242 318 PANTHER OSJNBA0019G23.4 PROTEIN 14 267 - -
Gma08g01242 318 Gene3D Classic Zinc Finger 196 255 - -
Gma08g01242 318 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01242 Gma-Chr8 10557655 10558611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01242 100 266 C2H2 Transcription Factor Family AT5G22890 56.140 3.27e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma08g01242 zf-met 0.0013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01242 - - gmx:100781980 625.55