Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma08g01227 | ATGAAGAGACTTGGCAGTTCTGATTCTCTGGGTGCTCTCATGACGATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGCGTATGGGAGGGAGTTTCAGTCCATGCTGGAAGGACTCGACGAAGAAGGGTGCGTGGAAGAACCAGGGCACCACTCTGAGAAGAAACGACGACTAAGCGTGGATCAGGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACCGAAAGTTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGTGCCAGATGGAAGACAAAGCAATTGGAAAGAGATTACGGCGTCCTCAAAGCCAATTATGAATCACTTAAACTTAACTACGACACCCTCCAACAAGACCACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCGAGGCTGGTGCAAGAAGAGAACAACAACAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGCTGACCACCACGCTCTGTGAAACCGCCATTCCTGGATCGGACACGAAGGAGTTGAGTTACGAGTGTTTTAACAAGAGTGATGAGGTGGGAGGGGGTTCTTCTGTGTTCCATGTGGATTTCAAAGATGGCTCTTCTGATAGTGACTCAAGCGCGATCTTGAACGAGGAGAACAACAACCACAGCCCCAACAATAACGCGGCGATTTCGTCGTGTGGGGTTCTGCAAAGTCACGGGCTTTTGTTGTCGCCTTCTTCGTCGTCGATGAACAACTGTTTCCAGTTCCAGAAACAGTACCAGACGACGACGACGCAGTACGTAAAGATGGAGGAGCACAATTTTCTTAGCGCCGACGAGGCCTGCAATTTCTTCTCGGATGAACAAGCACCAACTCTGCAGTGGTACTGTTCAGAGGAATGGAGTTAA | 939 | 0.4867 | MKRLGSSDSLGALMTICPPTDEHSPRNNHAYGREFQSMLEGLDEEGCVEEPGHHSEKKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKLNYDTLQQDHEALLKEIKELKSRLVQEENNNNTESDVSVKEEMLTTTLCETAIPGSDTKELSYECFNKSDEVGGGSSVFHVDFKDGSSDSDSSAILNEENNNHSPNNNAAISSCGVLQSHGLLLSPSSSSMNNCFQFQKQYQTTTTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS | 312 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma08g01227 | 312 | Coils | Coil | 111 | 166 | - | - | |
Gma08g01227 | 312 | Gene3D | - | 52 | 119 | - | - | |
Gma08g01227 | 312 | Pfam | Homeobox associated leucine zipper | 112 | 153 | IPR003106 | GO:0006355|GO:0043565 | |
Gma08g01227 | 312 | Pfam | Homeodomain | 57 | 110 | IPR001356 | GO:0003677 | |
Gma08g01227 | 312 | PRINTS | Lambda-repressor HTH signature | 83 | 92 | IPR000047 | GO:0003677 | |
Gma08g01227 | 312 | PRINTS | Lambda-repressor HTH signature | 92 | 108 | IPR000047 | GO:0003677 | |
Gma08g01227 | 312 | SUPERFAMILY | Homeodomain-like | 41 | 114 | IPR009057 | - | |
Gma08g01227 | 312 | CDD | homeodomain | 57 | 113 | IPR001356 | GO:0003677 | |
Gma08g01227 | 312 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 304 | IPR045224 | GO:0003700 | |
Gma08g01227 | 312 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE | 1 | 304 | - | - | |
Gma08g01227 | 312 | ProSitePatterns | 'Homeobox' domain signature. | 87 | 110 | IPR017970 | GO:0000981|GO:0006355 | |
Gma08g01227 | 312 | ProSiteProfiles | 'Homeobox' domain profile. | 52 | 112 | IPR001356 | GO:0003677 | |
Gma08g01227 | 312 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Gma08g01227 | 312 | SMART | HOX_1 | 55 | 116 | IPR001356 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma08g01227 | Gma-Chr8 | 10410795 | 10412122 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma08g01227 | 1 | 312 | Homeobox Transcription Factor Family | AT4G40060 | 48.788 | 1.78e-84 | 254 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Gma08g01227 | Homeodomain | 4.4e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma08g01227 | K09338 | - | gmx:100796213 | 544.273 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma05g01741 | 05 | 39037549 | 39039873 | Gma08g01227 | 08 | 10410795 | 10412122 | GST | |
Gma08g01227 | 08 | 10410795 | 10412122 | Gma18g00137 | 18 | 1067762 | 1070457 | PCT | |
Gma08g01227 | 08 | 10410795 | 10412122 | Gma11g02438 | 11 | 39729730 | 39732360 | PCT |