Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01210 ATGTTAGGAGAAGAGAGTAACAACAACAACGACCGCGCCGGCGGTCACCGGAGAACAACACATTCCCGGTCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCCACAAACGCAGCGTTTTGGAGTGGCCCAGCGCCGGCTGCGACGATCTCGGTGATTGGTCTCTTCCACCGACCCCTAGAGGGTCCACCAAAACACCAGATTCGGGTTCGGGTCAAGTTTTCCAGTTCAAGAAAGACTATTACGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCGTCGAGCTTCTGCGGCGGCACGGGATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACCGACTTCGTCTACAAGACCCTCTGGCTGCGTGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTCTTCGATTACTTCGAGGATGTCCGGAACCAGGGTGGGCGCGTGTTCGTCCACTGCTGCCAGGGCGTGTCGCGCTCTACCTCGCTCGTCATCGCGTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCCTTTCACTATGTCAAGATCGCGCGTGGCGTAACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGCGTGCACGCCATGCCCGCGAGTCCTAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTATGACCCTCTTCATCTTGTGCCTAAGTTGATTGATCATCCTTCCTCACGCGCTCTTGACTCGCGTGGCGCATTTGTTGTGCATGTGCCTAATGCTATATACGTGTGGATTGGGAAGGAGTGTGGGTCGGTGATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGGGCAACGGAGAAGATTGTTAGTGTGTTTGAGGATGAAGAGCCTAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGTGGAGAATGGAGAGGTGAAGAATGTGGTGGAGAGAATTGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTGGATTTTGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCGGAAAATTGCCTTCCTGCCAGGGAAAATGGGTGGGGGAGATTGACAAGGAAGCTTGCTAGTGGTATCATGAAAGGGTTGTTCACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGAAATCAACATAAGAATGTTGATCCTCCTTTGCCACCATCTTCTAACAATGTGGGTGGTTCGTGGAGTTCCTTTGAGTGTTTTGTAGATAATGGCTTAGAGAGGGGAAAGGATAGTGTTCAACAAGTCAGGGATCAGTTTGTTGTTCCTAGCGTTGGGTCATCAATGCCGCCACCATCGCCTCATAGTCGAGCAGCATCGGATTCTTTTGCTTGTTTTCTAAGTAACAGCTCCAAATTCAGTTCCAAATCTCCACCACTTTCACCCGCCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGATTTGTCAATCGTGTCTTCTCGGCAGTCATCGCCTTCCGGTCTGGAATCAGCTGAACCCAATCATGTGAAAGATGCATCTTCCTCAGAGAGTCGCTCTTTAGTTCAGAAAGAAGGTGAGGCATTTCTGGCTAATCACACCTTGGTAGGGGCAAAGTCCAGTTTGCCGCGCAAAGGATCTTCCCTCTCCATTGCAGAGCGCAGAGGGAGTAACCCGCCACCTCGCATGATGCTACCCTTGGCCAGTGAATCATCCCGTGTCAGCAAGGTCCGGGTAAGATCCAGGTCTTTCTCATTGCCTGCCTTGGATGATACTTAG 1965 0.5186 MLGEESNNNNDRAGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAIHKRSVLEWPSAGCDDLGDWSLPPTPRGSTKTPDSGSGQVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSVELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRNQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKIARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLIDHPSSRALDSRGAFVVHVPNAIYVWIGKECGSVMCCNARSAAAQVVRYERATEKIVSVFEDEEPKEFWIALSTKEVVVVENGEVKNVVERIEIDVGIRPRRVEEYDLDFGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHKNVDPPLPPSSNNVGGSWSSFECFVDNGLERGKDSVQQVRDQFVVPSVGSSMPPPSPHSRAASDSFACFLSNSSKFSSKSPPLSPASSDYASSFTFSPSSTDLSIVSSRQSSPSGLESAEPNHVKDASSSESRSLVQKEGEAFLANHTLVGAKSSLPRKGSSLSIAERRGSNPPPRMMLPLASESSRVSKVRVRSRSFSLPALDDT 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01210 654 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 158 219 IPR000387 GO:0016311|GO:0016791
Gma08g01210 654 MobiDBLite consensus disorder prediction 602 632 - -
Gma08g01210 654 CDD DSP 100 234 - -
Gma08g01210 654 Gene3D Protein tyrosine phosphatase superfamily 79 241 IPR029021 -
Gma08g01210 654 PANTHER MKPA PROTEIN 32 591 - -
Gma08g01210 654 Pfam Dual specificity phosphatase, catalytic domain 107 237 IPR000340 GO:0008138|GO:0016311
Gma08g01210 654 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 32 591 - -
Gma08g01210 654 SUPERFAMILY Actin depolymerizing proteins 245 346 - -
Gma08g01210 654 MobiDBLite consensus disorder prediction 545 584 - -
Gma08g01210 654 ProSitePatterns Tyrosine specific protein phosphatases active site. 183 193 IPR016130 GO:0016311|GO:0016791
Gma08g01210 654 MobiDBLite consensus disorder prediction 1 44 - -
Gma08g01210 654 ProSiteProfiles Dual specificity protein phosphatase domain profile. 99 241 IPR020422 GO:0006470|GO:0008138
Gma08g01210 654 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 241 IPR029021 -
Gma08g01210 654 SMART dsp_5 99 238 IPR020422 GO:0006470|GO:0008138
Gma08g01210 654 MobiDBLite consensus disorder prediction 10 24 - -
Gma08g01210 654 Gene3D Severin 251 348 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01210 Gma-Chr8 10284415 10286790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01210 40 135 Protein tyrosine phosphatase (PTP) family AT3G55270 47.273 4.63e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01210 - - gmx:100802311 1268.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01210 08 10284415 10286790 Gma08g01210 08 10284415 10286790 ECH
Gma05g01724 05 38890968 38894838 Gma08g01210 08 10284415 10286790 GST
Gma08g01210 08 10284415 10286790 Gma18g00119 18 945978 947480 PCT
Gma08g01210 08 10284415 10286790 Gma11g02455 11 39856213 39859199 PCT