Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01182 ATGAAACAGTTGAAATTGGCTGCAGAAACTCACGCCAAAGAGGATAATCCTCTTAGGCATAAGCCAGAAATGGAAAACACACTTGAGTCTCCTGGCAGTTCACGGCATAGAAAGATATCAGCCAGATGGGATCCAGTTGACGCATGCCGGCCTATAGTCGATGAAGCACCTGTGTTTTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACTTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCTTGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATTCAGCAAATTGACTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATTAGGGGAAGGAAACGAAAACATAGAAAACAGTCAAAGATGGGCATGGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAGTGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAACATGAAAAAGTTAGTGATAATAGTCACCAGCAGAGATGGAAGCCCTCTGTGGAGGAAATTGAAGGCGAATACTGGCGAATAATAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGTTTTCCTAAGATATCATCCTTAACTAAGAACGAGTCAGATAGATATACCTTGTCTGGTTGGAATCTGAATAACTTCCCGCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAATTCCTGGAAGCCATGCTCCAGGTCTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAGTTCTTAAATCCGAGGGGGTGCCTGTACATCGCACTGTCCAGCATTCAGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGACTGGCTTCTGCATGGCCAGAATGCTGCCGAGCTTTACAGTTCGCAGTGCCGTAAGACTTCATTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGCATGCCCTTGCAGATTTAACTCTTCATGGAAAAGAAGATCTAAAATATATAAAATGGAGAAGCGCTTGTGGGAAAGATGGAGTTCTTACCAAAGCAGTTAAGATAAGGATAACTATGGAAAAGGAGAGGCTTGACTGTATTCCAACTCATTTAAAGATGCTGAAGATGGACAGTAAGTTTGATTTGTTTGAGGAAAGAGAATGCTTTGCTTGCTTCTATGACTTGCACCTATCTGCCGTAGGTTGCAAGTGCTCTCCTGACTGTTATTCTTGTCTCAAACATTCAAATTTGTTTTGCTCATGTGAAATGAACAACAGATTTATTCTGTTTCGTTATACTATGGATGAACTAAGTACATTGGTTGAAGCATTAGAAGGAGAATCGCATGCTATTGAAGTGTGGGCAAATAGAAACACTGTAATGGTTTCTGCTGATGCTGAGGATGCTTGCATTTATAAACAAGATGTGGAGAGTGCCATTTGCCAAACCCAGAGTTACAAAGAAGGGAAAAACTCAACTTATTGTGCAGGAACTAATGATAAGTCAAATTCAACTATACCTAGCAGTTCTTACAGCCAAATTTCAGCAGAATTGGTTCACTCAGAGTTTCACCATGAAACTCTTAGTGCACCATCTGACACTAAAGATTGTCATAAAGATAGTTTGAATGAAAAAGATTTGGCCATGGACAATAAAATTATGGTGGGCACAGGAGGTTCTGTGGATTTGAATATTGATGTTATGTCTGGTGAACCTGAAAATTATTTTCTGCATGCTGCTGATTACCATCATAATAAGGGTGTTCCATATGTGGAAAAAGTCTGCTTTGCAGAGACCAGAAAAGAACAAGACAACATGGAACCTGGGGCTGATTGTATTGCTTCCTTGGAGAAAGAATTTTCATCTTGTTCAAGGGATGTTCAAAATTCTTGTACACTTGATGGCTATAAATTGTTTGGGGTGGATTTGCAGATGCATTCTGATTCAGGAGAGCAACTCAACAGTGTATCTAAAATGGGCGTTGTCGAAACCTCCAATACAAGTATATCTTTGACAAACCAAAGCTCCTTAATGAATAACTTTGGTATTTCTGTTGAGCCTGTAAATTTGGGCTCTGTTATGTGCGGAAAACTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTATTTAGCATTCTTGATCCACCAAGAATTTGTAATTATGTTTCTGAAGTCTATGGTGCTGGATTTCTTGGGCCTATTTTCAAGGTTACCATGGAAGAACGTCCAAATGAGGCTTTCACAAACACCTCAGCAGATAAGTGCTGGGAAACAGTTCTTGACAGACTAAATCATGAAATCAAGAGGCGAAGGAGTCGAGGTGAAATAGAACTTCCACCCTTGGAACTTCTGCAAAGCATTAACGGTCACAAAATGTTTGGATTCCTTTCACCATCCATTATTCAGGCCGTTGAAGCTGCAGATCCCAAACATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAGTCTTCAGGCAGTGCCATTGATGACTGTAAGTTCAGTCATGGTTCAAGCAACTCCCTAGGTGATGTCAAGACCAAACTTTTTGGTGCCGGTTTGATAAAGCAGGAGCAAGATAGCATCATAGGAAATTGTGATTCTTTTGAAGAGATGAAATTGGTGCTACAAGGATTCTTGAAAAAGGCAAGTCCCAATGAATTAAGTGCCATGCATAAGTTATTCAGCTCTGATGCACTGTTCACTCAGTGGAGAACAGCATTTGTATCACTGATAGAGGAAATCCAGAAAGCTTGTGCATAA 3186 0.4112 MKQLKLAAETHAKEDNPLRHKPEMENTLESPGSSRHRKISARWDPVDACRPIVDEAPVFYPTIEEFEDTLGYIAKIRPQAELYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRKRKHRKQSKMGMGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYASVFKDCYFGLNDANEHEKVSDNSHQQRWKPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKISSLTKNESDRYTLSGWNLNNFPRLSGSALCFEGSDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGIPGSHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSVLKSEGVPVHRTVQHSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLLHGQNAAELYSSQCRKTSLSHDKLLFGCAQEAVHALADLTLHGKEDLKYIKWRSACGKDGVLTKAVKIRITMEKERLDCIPTHLKMLKMDSKFDLFEERECFACFYDLHLSAVGCKCSPDCYSCLKHSNLFCSCEMNNRFILFRYTMDELSTLVEALEGESHAIEVWANRNTVMVSADAEDACIYKQDVESAICQTQSYKEGKNSTYCAGTNDKSNSTIPSSSYSQISAELVHSEFHHETLSAPSDTKDCHKDSLNEKDLAMDNKIMVGTGGSVDLNIDVMSGEPENYFLHAADYHHNKGVPYVEKVCFAETRKEQDNMEPGADCIASLEKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSGEQLNSVSKMGVVETSNTSISLTNQSSLMNNFGISVEPVNLGSVMCGKLWCSKHAIYPKGFKSRVKLFSILDPPRICNYVSEVYGAGFLGPIFKVTMEERPNEAFTNTSADKCWETVLDRLNHEIKRRRSRGEIELPPLELLQSINGHKMFGFLSPSIIQAVEAADPKHQCVEYWNHKEVVSESSGSAIDDCKFSHGSSNSLGDVKTKLFGAGLIKQEQDSIIGNCDSFEEMKLVLQGFLKKASPNELSAMHKLFSSDALFTQWRTAFVSLIEEIQKACA 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01182 1061 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Gma08g01182 1061 Gene3D Cupin 41 414 - -
Gma08g01182 1061 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Gma08g01182 1061 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1060 - -
Gma08g01182 1061 Pfam jmjN domain 57 90 IPR003349 -
Gma08g01182 1061 SMART fyrn_3 823 867 IPR003888 GO:0005634
Gma08g01182 1061 SMART fyrc_3 873 968 IPR003889 GO:0005634
Gma08g01182 1061 MobiDBLite consensus disorder prediction 130 165 - -
Gma08g01182 1061 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Gma08g01182 1061 SMART JmjN_1 55 96 IPR003349 -
Gma08g01182 1061 SUPERFAMILY Clavaminate synthase-like 270 451 - -
Gma08g01182 1061 SMART cupin_9 264 430 IPR003347 -
Gma08g01182 1061 Gene3D - 815 953 - -
Gma08g01182 1061 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1060 - -
Gma08g01182 1061 Pfam F/Y rich C-terminus 871 958 IPR003889 GO:0005634
Gma08g01182 1061 MobiDBLite consensus disorder prediction 130 146 - -
Gma08g01182 1061 ProSiteProfiles FYR domain FYRN motif profile. 809 867 IPR003888 GO:0005634
Gma08g01182 1061 ProSiteProfiles FYR domain FYRC motif profile. 869 959 IPR003889 GO:0005634
Gma08g01182 1061 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Gma08g01182 1061 MobiDBLite consensus disorder prediction 1 39 - -
Gma08g01182 1061 Pfam F/Y-rich N-terminus 820 864 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01182 Gma-Chr8 10082814 10090324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01182 812 996 JUMONJI Transcription Factor Family AT1G30810 52.432 3.18e-53 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma08g01182 JmjC 1.6e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01182 - - gmx:100814590 2180.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01182 08 10082814 10090324 Gma08g01182 08 10082814 10090324 ECH
Gma05g01697 05 38714578 38724602 Gma08g01182 08 10082814 10090324 GST