Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01163 ATGGATTGTCATGGTGGTATTTGCCAAAGCTCTCCAAACCGGGAGCATGAAGGCCTTAATGAACATGTTTTCTTGCATGGTGACTTGGATCTGTTGATAGTAGAAGCCAAGTCTCTTCCAAATTTAGATTTATCCACTGAAGCAGTTAGAAAATGCATCACTATGGGAAACATGTGCCATCCTCCATTTATAAAAGGACTTAAGACACACTCAGGAAAAGACAAGATGATAACTAGTGACCCTTATGTTTCTGTATGCATTGCTGGTGCTACCATAGCTCAGACTAGAGTCATTGCTAACTGTGAGAACCCTTTGTGGGATGAGCAATTCATTGTGCCTGTTGCTCACCCTGCACAAAAACTAGAGTTCCTTGTGAAGGACAACGATCTTCTTGGTGCTGAACTCATTGGAGTTGTGGAGATACCTGTTCAGAAGATAATTGCTGGAAACACTATTAATGATTGGTTTCCCATTATTGGTCAGTATGGAAACTGCTTAAAACCTTATCCTGAATTGCATATTTCTGTTCAGTATAGGCAAATTGGAGTGAACCGTTCAGAGAGTATCAGTAGTGGGGATGGAAAAGCTTTAGGAGTTCCTAAAACATATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATTTACCAGATGGTATGCTACCTGAAATTCCACTTGAGGGTGGAAAAGTGTTTCAGCAGAATAAATGTTGGGAGGACATATGCCATGCAATTTTGGAAGCTCATCACCTCATATACATTATAGGATGGTCAGTTTATCACCCAGTGAGGCTTGTCAGAGAGGCAACAAAACCATTGCCTTCGGGGGGCGAGCTTTCGCTTGGAGAGCTGTTGAAGTACAAGTCACAAGAAGGGCTCCGAGTGGTTATGCTGATTTGGGATGACAGAACTTCACATGACAAGTTTCTGTTGAAAACAGATGGTGTCATGCAGACTCATGATGAAGAAACTAAAAAGTTTTTCAAACATTCTACTGTTCATTGTGTGCTATCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGAACCCTCTTTACACATCACCAGAAATGTGTGCTTGTAGACAGTCTAGGTTCCGGCAATAATCGAAAAATAACAGCTTTCATGGGTGGTTTGGATCTATGTGATGGTAGATATGATACACCTGAGCATCGGCTCTTTCGTGATCTAGATACAGTCTTTCATAATGATTTTCATAATCCTACATTTCAATTAAATTCAAATTCGTGTGCACCAAGGCAGCCATGGCATGACTTACACTGCAAAATTGAAGGTCCAGCAGCATATGATATATTGACCAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGCGACTTCAGGCTCAAAAAGGTGACAAATTGGCATGATGATGCTTTGCTAAGGCTAGACCGGATTTCATGGATTGTCAAACCTTCTCCTTGTTCCAAAGGCGATAAATCTGTCCATGTAACCGATGAAAAAGATCCTGAGAGTTGGAATGTGCAGatatttaggtccatagattcaggatccgtgaagggatttccaaaggaTGTTGACAAAGCTAAGTCTCAGaatcttttgtgtggaaaaaatttgaaagtagatcaaagcatccatactgcttatgtgagagcaataagatcggctgagcgctttgtatatattgagaatcagtattttttgggctcctcctatcattggccttcatataaaaaTAATGCAGgtgcaaaccacctggttcccatggagttggctttgaaaattgctggtaagatcggtgcaaatgaacgcttttgtgtatatatagttataccaatgtggccagagggtgttccaacaagtgctgctgttcaagaaatattgttctggcagGGACAGACAATGTCTATGATGTACAAGATTATAGCTGATGCCCTTGAAAAAGCAGGTCTCTCCGATAAGTATCATCCACAAGATTATCTCAACTTTTACTGTCTTGGAAAGAGAGAACCACAATCCACAAATATTTCACCAACACCAAATCCATCAGAAAACCGCGCTTTGGTATCAGTTAAAAAATTCAGACGTTTTATGATTTATGTCCATGCCAAAGGAATGGTAATTGATGACGAATACGTAATTATTGGATCAGCAAATATTAACCAGAGATCCTTAGATGGTTCGAGGGACACAGAAATAGCTATGGGTGCTTATCAACCAAATTATACATGGACAGAAAAGAATGCTCATCCACGTGGCCAGGTGTATGGATACAGAATGTCACTGTGGGCTGAGCACCTTGCTGATCTTGATCATTGTTTTACTGAACCTCACAACCTGGAATGTGTGAGACATGTCAACAAAATTGCCAAACAAAACTGGGACATATATGTGTCTGAGGAAGGGAATCGGATGAGGGGACACTTGATGCAATATCCAGTTAAGATCAGCAAGGATGGAAAAGTTAGTGCACTTGATGATTATGAATCCTTTCCTGATGTTGGTGGCAAAGTTCTTGGATCACCAAATTCACTTCCGGATGCACTAACCGCCTGA 2574 0.357 MDCHGGICQSSPNREHEGLNEHVFLHGDLDLLIVEAKSLPNLDLSTEAVRKCITMGNMCHPPFIKGLKTHSGKDKMITSDPYVSVCIAGATIAQTRVIANCENPLWDEQFIVPVAHPAQKLEFLVKDNDLLGAELIGVVEIPVQKIIAGNTINDWFPIIGQYGNCLKPYPELHISVQYRQIGVNRSESISSGDGKALGVPKTYFPLRKGGSVTLYQDAHLPDGMLPEIPLEGGKVFQQNKCWEDICHAILEAHHLIYIIGWSVYHPVRLVREATKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDSLGSGNNRKITAFMGGLDLCDGRYDTPEHRLFRDLDTVFHNDFHNPTFQLNSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWIVKPSPCSKGDKSVHVTDEKDPESWNVQIFRSIDSGSVKGFPKDVDKAKSQNLLCGKNLKVDQSIHTAYVRAIRSAERFVYIENQYFLGSSYHWPSYKNNAGANHLVPMELALKIAGKIGANERFCVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALEKAGLSDKYHPQDYLNFYCLGKREPQSTNISPTPNPSENRALVSVKKFRRFMIYVHAKGMVIDDEYVIIGSANINQRSLDGSRDTEIAMGAYQPNYTWTEKNAHPRGQVYGYRMSLWAEHLADLDHCFTEPHNLECVRHVNKIAKQNWDIYVSEEGNRMRGHLMQYPVKISKDGKVSALDDYESFPDVGGKVLGSPNSLPDALTA 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01163 857 PANTHER PHOSPHOLIPASE D 21 857 IPR015679 -
Gma08g01163 857 SUPERFAMILY Phospholipase D/nuclease 549 772 - -
Gma08g01163 857 PANTHER PHOSPHOLIPASE D 21 857 - -
Gma08g01163 857 CDD C2_plant_PLD 22 179 - -
Gma08g01163 857 Pfam Phospholipase D Active site motif 361 395 IPR001736 GO:0003824
Gma08g01163 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 703 730 IPR001736 GO:0003824
Gma08g01163 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 360 395 IPR001736 GO:0003824
Gma08g01163 857 PIRSF PLD_plant 14 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gma08g01163 857 Pfam PLD-like domain 695 739 IPR025202 -
Gma08g01163 857 Gene3D Endonuclease Chain A 496 752 - -
Gma08g01163 857 SMART pld_4 360 395 IPR001736 GO:0003824
Gma08g01163 857 SMART pld_4 703 730 IPR001736 GO:0003824
Gma08g01163 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 179 IPR035892 -
Gma08g01163 857 Gene3D C2 domain 23 179 IPR035892 -
Gma08g01163 857 SUPERFAMILY Phospholipase D/nuclease 199 464 - -
Gma08g01163 857 Pfam C2 domain 27 158 IPR000008 -
Gma08g01163 857 SMART C2_3c 28 155 IPR000008 -
Gma08g01163 857 Pfam Phospholipase D C terminal 777 847 IPR024632 -
Gma08g01163 857 ProSiteProfiles C2 domain profile. 9 156 IPR000008 -
Gma08g01163 857 Gene3D Endonuclease Chain A 232 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01163 Gma-Chr8 9899122 9908879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01163 23 856 Phospholipase D Gene Family (Wang group) AT2G42010 54.167 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01163 K01115 - gmx:100810824 1781.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01163 08 9899122 9908879 Gma08g01163 08 9899122 9908879 ECH
Gma05g01675 05 38476273 38485757 Gma08g01163 08 9899122 9908879 GST