Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma08g01159 | ATGGAGATTCACTACAGTAACAGCTACTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATCTTGTGACGACGGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGGTGAAAGAGCCTTCAGTGCCAGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCGTTGAGGAAACATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTACGATGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCTCAAGAGAACTATCATATCTGCCCATATCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGCAGAATGCACCCTTGGATGTGGCAAAGTACACTACTCCACCTCCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATACGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCCTATGATGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCACCCGGGGCTTATGGCTGATGAAAATGCAGAGCATGCTCAGGCTAATGTTGGCAATGAAATGGATGAAGCAAGTGACCATGATGCCTATGTTGCGAAACGGTCAAATGGTAAAATTCAGAAGCAGAGTAAGCCAAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTCTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTCGATGAAGAAGATAGTGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGATGATGAAGAAACAGAATATGAAGACTGA | 1119 | 0.4343 | MEIHYSNSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMILKWVTEDTLKTLKEKVKEPSVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKQNAPLDVAKYTTPPPEKQTKTSKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMADENAEHAQANVGNEMDEASDHDAYVAKRSNGKIQKQSKPKPNLKLPPSKIAKRKVSTPTLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYAGGNNEDDDEETEYED | 372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma08g01159 | 372 | MobiDBLite | consensus disorder prediction | 207 | 222 | - | - | |
| Gma08g01159 | 372 | MobiDBLite | consensus disorder prediction | 334 | 348 | - | - | |
| Gma08g01159 | 372 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 4 | 371 | - | - | |
| Gma08g01159 | 372 | SMART | c2h2final6 | 77 | 101 | IPR013087 | - | |
| Gma08g01159 | 372 | SMART | c2h2final6 | 231 | 256 | IPR013087 | - | |
| Gma08g01159 | 372 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - | |
| Gma08g01159 | 372 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
| Gma08g01159 | 372 | SMART | c2h2final6 | 136 | 160 | IPR013087 | - | |
| Gma08g01159 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 101 | IPR013087 | - | |
| Gma08g01159 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 231 | 261 | IPR013087 | - | |
| Gma08g01159 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
| Gma08g01159 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 117 | 169 | IPR036236 | - | |
| Gma08g01159 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 165 | IPR013087 | - | |
| Gma08g01159 | 372 | MobiDBLite | consensus disorder prediction | 190 | 228 | - | - | |
| Gma08g01159 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 226 | 254 | IPR036236 | - | |
| Gma08g01159 | 372 | PANTHER | BNAA03G13270D PROTEIN | 4 | 371 | - | - | |
| Gma08g01159 | 372 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 130 | IPR036236 | - | |
| Gma08g01159 | 372 | Gene3D | Classic Zinc Finger | 205 | 272 | - | - | |
| Gma08g01159 | 372 | Gene3D | Classic Zinc Finger | 163 | 196 | - | - | |
| Gma08g01159 | 372 | Gene3D | Classic Zinc Finger | 103 | 133 | - | - | |
| Gma08g01159 | 372 | Gene3D | Classic Zinc Finger | 77 | 102 | - | - | |
| Gma08g01159 | 372 | Gene3D | Classic Zinc Finger | 134 | 161 | - | - | |
| Gma08g01159 | 372 | MobiDBLite | consensus disorder prediction | 290 | 372 | - | - | |
| Gma08g01159 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 233 | 256 | IPR013087 | - | |
| Gma08g01159 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 106 | IPR013087 | - | |
| Gma08g01159 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 135 | IPR013087 | - | |
| Gma08g01159 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 191 | IPR013087 | - | |
| Gma08g01159 | 372 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 195 | IPR013087 | - | |
| Gma08g01159 | 372 | Pfam | Zinc finger, C2H2 type | 136 | 160 | IPR013087 | - | |
| Gma08g01159 | 372 | Pfam | Zinc finger, C2H2 type | 166 | 190 | IPR013087 | - | |
| Gma08g01159 | 372 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 160 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma08g01159 | Gma-Chr8 | 9869932 | 9874192 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma08g01159 | 10 | 357 | C2H2 Transcription Factor Family | AT4G06634 | 64.850 | 3.21e-139 | 399 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Gma08g01159 | zf-C2H2 | 0.0089 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma08g01159 | - | - | gmx:100785164 | 708.368 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma08g01159 | 08 | 9869932 | 9874192 | Gma08g01159 | 08 | 9869932 | 9874192 | ECH | |
| Gma05g01671 | 05 | 38445792 | 38450678 | Gma08g01159 | 08 | 9869932 | 9874192 | GST |