Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01143 ATGAATAATCAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCaatttggaatattgaatttgAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAG 987 0.3749 MNNQRLEFGRPVSSKRRLQDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSQISKVLSVTLDEWSSDEIDAMIEVGGNSSANSIYEAYFPEGFTKPGPDATHDQRVKFIRLKYEHQEFLQPSLRIVSGKSNPPKSISKGIMDSFRITSDSQHMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILNLNVFDYDLFSADDIMGEADIDLQPLITSAIAYGDARMFDDMQIGKWLKSNGNALIDDSIVNIVDGKVKQVISLKLQNVESGELDLELEWMPLDY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01143 328 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Gma08g01143 328 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Gma08g01143 328 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Gma08g01143 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 8 328 - -
Gma08g01143 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 172 317 IPR035892 -
Gma08g01143 328 Gene3D Arf GTPase activating protein 6 135 IPR038508 -
Gma08g01143 328 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Gma08g01143 328 Gene3D C2 domain 170 327 IPR035892 -
Gma08g01143 328 CDD ArfGap 18 124 - -
Gma08g01143 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096
Gma08g01143 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 328 IPR044518 GO:0005096|GO:0005543
Gma08g01143 328 ProSiteProfiles C2 domain profile. 151 269 IPR000008 -
Gma08g01143 328 Pfam C2 domain 173 262 IPR000008 -
Gma08g01143 328 SUPERFAMILY ArfGap/RecO-like zinc finger 15 131 IPR037278 -
Gma08g01143 328 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Gma08g01143 328 CDD C2_ArfGAP 171 315 - -
Gma08g01143 328 SMART C2_3c 173 268 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01143 Gma-Chr8 9653600 9658200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01143 8 327 C2H2 Transcription Factor Family AT4G21160 72.036 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01143 K12486 - gmx:100806567 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01143 08 9653600 9658200 Gma08g01143 08 9653600 9658200 ECH
Gma05g01655 05 38237801 38242325 Gma08g01143 08 9653600 9658200 GST