Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01114 ATGGGAATTCAGGGGTTTTTGCCGCTATTGAAATCGATTATGGTTCCAGTCCACATCAAGGATTTGAAGGGTTGTTCTGTAGCGGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACGGAACTCTGCAAAGGGATGCCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGCTGCGCCATTTTGGGGTTAAGCCTATTCTAGTGTTTGATGGAGGGCTTCTGCCGATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGCTAGAAAGGATAATCTTGCACGTGCAGTTGAACATGAGTCAGATGGAAATTCAGCTGCTGCTTATGAGTGCTACCAGAAAGCAGTTGATATCTCACCTCAAATTGCATGTGAGCTAATTCAGGTCTTGAAGCAGGAGAACTTGCAGTATATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGTGGACAAGTTGATGCAGTTATAACTGAAGATTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTGCAGTCCTTGCCAGGTATGGGTCTCAAAAGGGCCCATGCAAGCATTAAAAAATTTAGAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAGTGGAGTTTCCGTGCCTCCCTTTTATGAAGAGTCATTCAAGAAGGCTATATTTACTTTCCAATATCAACGGGTTTACGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGTGATGAGTTAGACTTTTTAGGCCCATATCCTTCATTTTTAATCTATACCTTAACCTGGGATACACCCATGCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGAGAATCTTACAGCCAGATTAGCAATTGCAGGAACTAGTCAATTCAAGACTCACCATTCTGAAAGTGCAAAGAAAAAGATTGATTTGCCCGTGCAGAAGAATCTCTTGACTAAGTATTTTTGTTTTGCTTCTCTTGAAGCGAAAAGGAAATTCAGAGCTCCTCGGGTGTCACCTAGTGCTGCTAATGAAACAAAGAATTCTACTGCATCAGTAATTGACTCTGAGGATTGGGGCAGTGTCCCTCCTCCTAATAGCCATGTTGAATATGGTTCTGCCACAAACATTTCTGAATTTACAGAGTCTCCATGTCACATGTCTATGGTGGGTGAGGAGAAGAAAAGCCCTGAACATACAGTACTGCGACAGCCCAGGCAGCCAATTCATAAACCATGCCTGGGGTTGCATAAGGATCATGAGCACACAAATGTCGAAGACACAGttgaaggaaaaaccagggaggcaacacaaaaggtaattgtaaggagtgcttattttcagcacaagcaagtggaaaagaatgtttatgatgagaaacaagattgcctatcctctggcgttgtcattgataagagaaaaaatgccttatctgatagtgatttttgtaacaatgatttcaagaataaagaccaggtagtccatgacttacttgaaggaaaaagcagggagggaacaagaaaggtaattgtaaggagtgcttattttcagcacaagcaagtagaaaagaatgtttgtgataataaacaagattgcctgtcctctggcattgtcattgacgagagaaaaatcgccatatctgacagtgatttatgtaacaaccttttgaagaataaagaccTGAAAAGGAAGATCTCCCCTAATGACAATATTCAAAATGAAAATTTGCAGCCCAGGCAAATGCACCGTTCTTCACCTCCTCATAATAATGGTTGCTGCGATCACAATGTTGACGGACCATTTACAGAGAATAATGCTGAAGAAGAAAATTTTGGGACAAAAATTTCCCATCTGGGCCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCCGTTATGTCATCCTTTAGATGCACTTCTGGCACTCGAGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTTCGAAACACTTCTGGTAATAGGCCAAAAAAAACTGTAGACTTTGGTCAATATGCATATGTGCCAAAACAAACCAAGACTAGAAGAATAGCTCCTGGGAATTAA 2271 0.3435 MGIQGFLPLLKSIMVPVHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGMPTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARARKDNLARAVEHESDGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAIFTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPYPSFLIYTLTWDTPMPKDIAQRIAKGDLDPITKMPFEGENLTARLAIAGTSQFKTHHSESAKKKIDLPVQKNLLTKYFCFASLEAKRKFRAPRVSPSAANETKNSTASVIDSEDWGSVPPPNSHVEYGSATNISEFTESPCHMSMVGEEKKSPEHTVLRQPRQPIHKPCLGLHKDHEHTNVEDTVEGKTREATQKVIVRSAYFQHKQVEKNVYDEKQDCLSSGVVIDKRKNALSDSDFCNNDFKNKDQVVHDLLEGKSREGTRKVIVRSAYFQHKQVEKNVCDNKQDCLSSGIVIDERKIAISDSDLCNNLLKNKDLKRKISPNDNIQNENLQPRQMHRSSPPHNNGCCDHNVDGPFTENNAEEENFGTKISHLGQYSEIAEKSMERFVSVMSSFRCTSGTRVSGLRAPLKDVRNTSGNRPKKTVDFGQYAYVPKQTKTRRIAPGN 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01114 756 SMART xpgineu 138 208 IPR006086 GO:0004518
Gma08g01114 756 MobiDBLite consensus disorder prediction 405 428 - -
Gma08g01114 756 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Gma08g01114 756 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Gma08g01114 756 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Gma08g01114 756 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Gma08g01114 756 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Gma08g01114 756 MobiDBLite consensus disorder prediction 634 657 - -
Gma08g01114 756 Pfam XPG I-region 142 226 IPR006086 GO:0004518
Gma08g01114 756 MobiDBLite consensus disorder prediction 407 422 - -
Gma08g01114 756 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Gma08g01114 756 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 346 IPR036279 -
Gma08g01114 756 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Gma08g01114 756 PANTHER EXONUCLEASE 1 1 728 IPR032641 GO:0006281|GO:0035312
Gma08g01114 756 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Gma08g01114 756 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 728 IPR006084 -
Gma08g01114 756 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Gma08g01114 756 Gene3D - 209 281 - -
Gma08g01114 756 MobiDBLite consensus disorder prediction 632 662 - -
Gma08g01114 756 Gene3D - 1 207 - -
Gma08g01114 756 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Gma08g01114 756 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Gma08g01114 756 SMART xpgn3 1 99 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01114 Gma-Chr8 9469901 9476016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01114 1 264 Core DNA Replication Machinery Family AT5G26680 26.715 1.36e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01114 K10746 - gmx:100798062 1489.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01114 08 9469901 9476016 Gma08g01114 08 9469901 9476016 ECH
Gma05g01631 05 38067314 38071928 Gma08g01114 08 9469901 9476016 GST