Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01112 ATGGCTTTTCCAAACCAATCCATGTCATCAGAGTCTCCCCAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGCGTCAAAGCTTCAATTGAGAGGTACAAGAAAGCAAGTTCAGATTCATCTAGTGGTGGACGATCTGCTTCTGAGGCTAATGCTCAGTTTTATCAGCAAGAAGCAGCCAAACTGCGTGTGCAGATCAGCAATCTGCAGAATCACAATAGGCAAGTGGCATTAGTCGGTTTGAGCACCATGAATGGCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATCAGCAGAATTCGTTCCAAGAAGAATGAGATGCTATTTGCAGAAATTGAGCACATGAAGAAAAGGGAGATATACTTGCACAATGACAACCAGCTTCTTAGAGCAAAGATAGGAGAAGGTGAGAGGAGTCACCATAATGTTAACGGGTTGTCTGGAACCACAAGCTATGAATCGATGCAATCTCAGTTTGACTCTCGCGGCTTCTTCCAAGTGACTGGATTACAACCTAATAATAATAATCAGTATGCCGGGCAAGACATGTCCCTTCAATTTGTGATTGTTAAGGAAATGCAAGTGCATCTTCATCTTACTGAAATTGCAATCTTCGTTGCTTCAACATCTACATACTCAGCTCTATGTGGAAGCTTGAAAGGAGTGTTGTGA 837 0.4241 MAFPNQSMSSESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGRSASEANAQFYQQEAAKLRVQISNLQNHNRQVALVGLSTMNGKDLKNLETKLEKGISRIRSKKNEMLFAEIEHMKKREIYLHNDNQLLRAKIGEGERSHHNVNGLSGTTSYESMQSQFDSRGFFQVTGLQPNNNNQYAGQDMSLQFVIVKEMQVHLHLTEIAIFVASTSTYSALCGSLKGVL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01112 278 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gma08g01112 278 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gma08g01112 278 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gma08g01112 278 Coils Coil 97 124 - -
Gma08g01112 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Gma08g01112 278 ProSiteProfiles K-box domain profile. 104 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g01112 278 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Gma08g01112 278 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gma08g01112 278 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Gma08g01112 278 Pfam K-box region 101 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g01112 278 PANTHER AGAMOUSB 11 238 - -
Gma08g01112 278 MobiDBLite consensus disorder prediction 1 21 - -
Gma08g01112 278 PANTHER MADS BOX PROTEIN 11 238 - -
Gma08g01112 278 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Gma08g01112 278 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gma08g01112 278 Gene3D - 29 113 IPR036879 GO:0003677|GO:0046983
Gma08g01112 278 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01112 Gma-Chr8 9430117 9437088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01112 15 243 MADS-box Gene Family AT3G58780 61.765 7.82e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma08g01112 K-box 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01112 K09264 - gmx:100776263 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01112 08 9430117 9437088 Gma08g01112 08 9430117 9437088 ECH
Gma05g01627 05 38020829 38028261 Gma08g01112 08 9430117 9437088 GST
Gma08g01112 08 9430117 9437088 Gma15g00837 15 6892176 6902726 PCT
Gma08g01112 08 9430117 9437088 Gma13g01971 13 35010181 35018995 PCT
Gma15g00837 15 6892176 6902726 Gma08g01112 08 9430117 9437088 PCT
Gma13g01971 13 35010181 35018995 Gma08g01112 08 9430117 9437088 PCT