Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01106 ATGGATGAGAATTCAGCAACAAATGGAACCCATGAGGTGATTTTAGATGTAAACAAGGATGTCTCTAGAACAACTCAACCCTCACGCTCTTGTGTCAATGTTTCTTTCTTACAGAAGTTGGTAGCTGAGGTGGTGGGAACATATTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAACAAGAACAACAACAACGTTGTAACACATCCTGGGATATCAATTGTTTGGGGACTGGTTGTGATGGTACTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCAGTCACCATTGCTTTTGCCTCCACCAGAAGGTTTCCCTTGAAGCAGGTACCGGTTTATGTAGTAGCTCAGGTTGTTGGATCCACACTTGCAAGTGCGACTCTCAGACTATTATTTAGTGGCAAGGAAACCCAGTTTTCAGGAACACTCCCATCTGGGTCTAACCTGCAAGCTTTTGTGATTGAATTCTTAATCACCTTTTTCCTTATGTTTGTCATATCCGGGGTTGCCACTGATGACAGAGCGATCGGTGAGTTGGCCGGGATTGCCGTTGGGTCCACTGTGCTGTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCAGCCATTTTACACAATGAATACAGAGGAATATGGATATATATAGTGTCTCCAACTCTTGGGGCCGTGGCTGGAACATGGGTATACAACACCATTAGGTACACGGACAAGCCACTGCGTGAGATCACCAAGAGTACCTCTTTCCTTAAAGGAGTAGGGCGTAGTGGTAGCTCTAGGTGA 825 0.4582 MDENSATNGTHEVILDVNKDVSRTTQPSRSCVNVSFLQKLVAEVVGTYFLIFAGCASVVVNKNNNNVVTHPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFASTRRFPLKQVPVYVVAQVVGSTLASATLRLLFSGKETQFSGTLPSGSNLQAFVIEFLITFFLMFVISGVATDDRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAILHNEYRGIWIYIVSPTLGAVAGTWVYNTIRYTDKPLREITKSTSFLKGVGRSGSSR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01106 274 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 Gene3D Glycerol uptake facilitator protein. 2 259 IPR023271 -
Gma08g01106 274 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Gma08g01106 274 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Gma08g01106 274 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma08g01106 274 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Gma08g01106 274 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01106 Gma-Chr8 9388473 9391022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01106 20 270 Major Intrinsic Protein MIP AT5G37820 59.761 1.69e-105 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01106 K09874 - gmx:100794883 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01106 08 9388473 9391022 Gma08g01106 08 9388473 9391022 ECH
Gma05g01619 05 37959722 37962156 Gma08g01106 08 9388473 9391022 GST
Gma08g01106 08 9388473 9391022 Gma15g00825 15 6787700 6790142 PCT
Gma15g00825 15 6787700 6790142 Gma08g01106 08 9388473 9391022 PCT