Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01101 ATGGCTTCGGCTGCTATCTTCTCGTCGCTACGGCGGCGCCGGTCGCCGTCGCTGGAGGCGTTTCTGGCGCCGGTCGACCTCTCCGACGTGGCGTTGCTGGGGACTCTCATCTCCGTCGCCGGCGACATCGCGTCCTGCTTCTCCGGCCACCGGTTCCCCTTCCAGCGCCGGAACTCGCGTGCCCTCATCGGAAAAGTTGAGATTTTCCGGTCAATGTTAGGGTGTCTGAGAGACTCCGCCACCGCCGGAGCTCTTCCCCCGACGGCGGTGCTGTGCTTAAAGGAGCTCTATCTGCTTCTATATCGGTCAAAGATTCTTCTTGATTACTGTGCCCAATCGAGCAAGTTGTGGCTTCTGCTTCAGAATCATTGTGTTTCTGGTCACTTCCACGATTTGAGCCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGGGAAGTTGGCCTCAGTGATGATGTTAGGGAACAGATTGAGTTGTTGCAGAGACAGTCCAAGAGGGCTAAGTTGTTCATAGATAATAAAGATGATGTTCTTAGGATAAGGTTATTTTGGTTTCTTGATGAGTTTGAGAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGATGTTTCTTTGTGGATAAATTGAGGATTCTTGATGGTAAGAGTTGTAGGGTGGAGGTTGAAGCCTTGGAGGAGCAGATTGTGAACCATGAGGGTGATGTTGAGCCTACAGTTGCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGCAGGTTTTTGTTGTTTGGGTTTGAGGAAGAATTGGAAATTGAGATTCAAAAGAAGGGGGGGAAGAGGTTGATTACACTGGAAATTGCTGAAACGTTTTTGACTGTTCCTAAGGAGTTCTGTTGTCCTATATCATTGGATTTGATGTGTGATCCTGTGATAATTTCAACAGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAAGGGCATTGTACTTGTCCAAAAACGGGGCTATTGGTTTCTCATAATAGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATTATGCAGTGGTGCAGTGCACATGGAGTACCCTATGATCCACCTGAGGGGGTTGATGCATCTGTTGAGATGTTTTTATCAGCTTGTCCCTCCAAAGCTTCCCTGGAAGCTAACCAAGGGACGGCCACGCTTCTCATTCAGCAGCTTGCGGATGGGTCACATGCTGCAAAGACTGTGGCTGCTAGGGAGATAAGATTGCTGGCCAAAACTGGAAAGGAAAACCGTGCCTTCATTGCGCAAGCTGGGGCCATTCCTCATCTTAGGAACTTACTTTCCTCTCCTAGTGCTGTTGCACAGGAGAATTCTGTGACTGCACTGCTCAACCTATCCATTTTTGAAAGAAATAAAAGCATGATCATGGAGGAGGAAGGGTGTTTGGGATCAATAGTTGAGGTGTTGCGATTCGGGCACACCACAGAGGCAAGGGAGAATGCTGCGGCAACATTGTTCAGCCTCTCTGCTGTCCATGATTATAAGAAACGAATTGCGGATAATGTGGGAGCTGTTGAAGCATTGGCTTGGTTGTTGCAAAAGGGTACTCAAAGAGGAAAGAAGGATGCTGTCACAGCATTGTTTAATCTCTCCACTCACACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCCGTGAAAGCTATGGTTGTGGCTTTGGGGAATGAAGTAGTTGCTGAGGAAGCAGCTGGTGCCTTGGTCTTGATTGTTCGGCAGCCAGTTGGTGCCATGGCGGTGGTGAGGGAGGAAGCAGCGATAACCGGATTGATAGGAATGATGCGTTGTGGAACGCCGAGAGGTAAAGAGAATGCAGTTGCAGCATTGTTGGAGCTGTGCAGGAGTGGAGGTGCGGCTGCTACTCAAAGAGTGGTTAGGGTGCCGGCTCTGGCCGGATTGCTTCAAACCTTGCTCTTTACAGGTACAAAGAGGGCAAGAAGAAAGGCAGCCTCACTTGCTAGAGTGTTTCAGAGACGTGAAAATGCATCTCTACATTATGCTGGATTAGGTGTAGGTTATGCATTTGCTAGCGATTCAGCTTCAACCAGGAATACTGCAACCTTTGTATCTTAA 2109 0.4836 MASAAIFSSLRRRRSPSLEAFLAPVDLSDVALLGTLISVAGDIASCFSGHRFPFQRRNSRALIGKVEIFRSMLGCLRDSATAGALPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGEVGLSDDVREQIELLQRQSKRAKLFIDNKDDVLRIRLFWFLDEFESGRVPDSKDLRCFFVDKLRILDGKSCRVEVEALEEQIVNHEGDVEPTVAVLNGMVAITRYCRFLLFGFEEELEIEIQKKGGKRLITLEIAETFLTVPKEFCCPISLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGLLVSHNRLVPNRALRNLIMQWCSAHGVPYDPPEGVDASVEMFLSACPSKASLEANQGTATLLIQQLADGSHAAKTVAAREIRLLAKTGKENRAFIAQAGAIPHLRNLLSSPSAVAQENSVTALLNLSIFERNKSMIMEEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALAWLLQKGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVVALGNEVVAEEAAGALVLIVRQPVGAMAVVREEAAITGLIGMMRCGTPRGKENAVAALLELCRSGGAAATQRVVRVPALAGLLQTLLFTGTKRARRKAASLARVFQRRENASLHYAGLGVGYAFASDSASTRNTATFVS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01101 702 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Gma08g01101 702 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Gma08g01101 702 Gene3D - 517 673 IPR011989 -
Gma08g01101 702 SUPERFAMILY ARM repeat 385 668 IPR016024 -
Gma08g01101 702 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Gma08g01101 702 SMART arm_5 420 460 IPR000225 GO:0005515
Gma08g01101 702 SMART arm_5 462 503 IPR000225 GO:0005515
Gma08g01101 702 SMART arm_5 505 545 IPR000225 GO:0005515
Gma08g01101 702 SMART arm_5 546 584 IPR000225 GO:0005515
Gma08g01101 702 CDD RING-Ubox_PUB 291 332 IPR045210 -
Gma08g01101 702 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Gma08g01101 702 PANTHER U BOX DOMAIN-CONTAINING 11 688 - -
Gma08g01101 702 Gene3D - 390 516 IPR011989 -
Gma08g01101 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Gma08g01101 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Gma08g01101 702 SUPERFAMILY RING/U-box 280 361 - -
Gma08g01101 702 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 688 - -
Gma08g01101 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01101 Gma-Chr8 9347126 9350527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01101 1 696 U-box Gene Family AT1G29340 67.227 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01101 - - gmx:100817070 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01101 08 9347126 9350527 Gma08g01101 08 9347126 9350527 ECH
Gma05g01614 05 37913399 37916086 Gma08g01101 08 9347126 9350527 GST
Gma08g01101 08 9347126 9350527 Gma15g00813 15 6698931 6701731 PCT
Gma08g01101 08 9347126 9350527 Gma13g01997 13 35246788 35249540 PCT
Gma15g00813 15 6698931 6701731 Gma08g01101 08 9347126 9350527 PCT
Gma13g01997 13 35246788 35249540 Gma08g01101 08 9347126 9350527 PCT