Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01039 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCCGAAAATGCAGGTCCTGGTTCTTCTGCTGACAATGTGGGAACTGGTAGCACTTTAGCTCCCACGCGACCTGTTTATGTACCTCCTCATCTGAGGAACCGTCAGCCAGCAGCAGAATCCCCTGCCCCTGCTCCAGCATATAGTGGCCCTTCTTCTGGTGCTGGCTCTAGTTCTGGTGCTGGTAATTCTGGATCCCGTTATGCTGCACCCAGAAATGATTATCGTCCTGGGTATGGTGGTGGTGGTGGACGTACAGGTGGATGGGGAAACAAAAGTGGTGGATGGGATCGTGGCAGGGAGCGGGAAGTCAATCCCTTTGAAGAAGAGGATAACGCTGAAGAGGCATTCAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAAGACATTCCAGTGGAGACCAGTGGTGACAATGTGCCCCCACCTGTGAATACGTTTGCAGAGATTGATTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCGATATCTCTAGCTGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCATTCTGCTTCCCGATTATCAGTGGAATCATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCGCTTGCGCTTGTTCTTTCTCCAACGAGGGAGTTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACTGGGGTTAGGGTAGTTGTTGCATATGGTGGAGCACCAATAAACCAGCAGCTGCGGGATCTTGAAAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCATTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAGCAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCAACATTTCCAAAAGAGATACAGAGATTGGCTTCTGATTTCCTTTCAAATTATATTTTCCTTGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTAACTTTAGTTTTTGTGGAGACTAAGAAGGGAGCTGATTCGCTGGAACATTGGTTGTGTCTTAATGGTTTTCCAGCAACTACTATTCATGGTGACAGGTCACAGCAGGAAAGAGAATTAGCCTTGAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACCGATGTTGCTGCACGTGGTCTTGATATTCCCCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGACATTGATGATTATGTACACCGAATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGTCTTGCAACTGCATTCTTTAATGATAACAATTCATCGCTAGCTAGAGCTTTATCAGAACTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTATGCTGCTCGATCTTCTTTTGGTGGAGGCAGGAACCGGCGATCAGGCGGTCGATTTGGTAGTCGTGACTTTCGAAGAGAGGGCTCTTTCAGTAGAGGTTCTTCTGATTACTACAGTGCGGGAAACAGCAGTGGTGGTGGATATGGAGGCTCTGGTGGGTATGCTGGTGGAGGGTATGGTCCTGGGGTCACTAGTGCTTGGGATTGA 1860 0.4737 MRTSWADLAANSAAENAGPGSSADNVGTGSTLAPTRPVYVPPHLRNRQPAAESPAPAPAYSGPSSGAGSSSGAGNSGSRYAAPRNDYRPGYGGGGGRTGGWGNKSGGWDRGREREVNPFEEEDNAEEAFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALSELMQEANQEVPAWLSRYAARSSFGGGRNRRSGGRFGSRDFRREGSFSRGSSDYYSAGNSSGGGYGGSGGYAGGGYGPGVTSAWD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01039 619 Gene3D - 378 557 IPR027417 -
Gma08g01039 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Gma08g01039 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 531 IPR027417 -
Gma08g01039 619 MobiDBLite consensus disorder prediction 558 578 - -
Gma08g01039 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 375 IPR014001 -
Gma08g01039 619 SMART helicmild6 433 514 IPR001650 -
Gma08g01039 619 Pfam Helicase conserved C-terminal domain 399 514 IPR001650 -
Gma08g01039 619 CDD SF2_C_DEAD 387 523 - -
Gma08g01039 619 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 52 586 - -
Gma08g01039 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 586 - -
Gma08g01039 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 553 IPR001650 -
Gma08g01039 619 SMART ultradead3 178 390 IPR014001 -
Gma08g01039 619 MobiDBLite consensus disorder prediction 586 605 - -
Gma08g01039 619 Gene3D - 114 377 IPR027417 -
Gma08g01039 619 MobiDBLite consensus disorder prediction 1 32 - -
Gma08g01039 619 MobiDBLite consensus disorder prediction 63 78 - -
Gma08g01039 619 CDD DEADc_DDX3_DDX4 160 381 IPR044763 GO:0003724|GO:0005524
Gma08g01039 619 Pfam DEAD/DEAH box helicase 183 364 IPR011545 GO:0003676|GO:0005524
Gma08g01039 619 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01039 Gma-Chr8 8796818 8802459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01039 157 546 Eukaryotic Initiation Factors Gene Family AT3G19760 32.225 1.30e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01039 K11594 - gmx:100795756 1048.5