Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01001 ATGTCTCTCCCCAAAACCCTACTTTCTCTCTTCCTTCTCCTCACGATCCCCCTAGTAACCGCCGATGACGCCGCGGTGATGTCGAATTTTCTCAAATCCCTCACTCCACCGCCCTCGGGCTGGTCTGAAACAACCCCATTCTGCCAATGGAAGGGTATCCAATGCGATTCATCCAGCCACGTGACCAGCATAAGCCTCGCTTCGCATTCCCTCACCGGAACACTCCCCTCGGATCTCAATTCCCTCTCTCAACTCCGCACTCTCTCCCTCCAAGACAATTCCCTCACCGGCACCCTCCCTTCTCTCTCCAACCTTTCTTTCCTCCAAACCGTCTACTTAAACCGCAACAACTTCTCCTCCGTGTCCCCCACCGCTTTCGCCTCCCTAACCTCCCTCCAAACCCTCAGCCTCGGCTCCAACCCTGCTCTCCAACCCTGGTCCTTCCCCACCGACCTCACTTCCTCCTCTAACCTAATCGACCTCGACCTCGCCACCGTATCCCTCACCGGTCCCTTGCCGGACATTTTCGACAAATTCCCTTCCCTTCAACACCTTCGCCTCTCTTACAACAACCTCACCGGCAATTTACCCTCCTCTTTCTCCGCCGCCAACAATCTCGAAACGCTCTGGCTCAACAACCAGGCCGCCGGCTTGTCCGGTACCCTCCTCGTCCTCTCCAACATGTCTGCATTAAACCAGTCCTGGCTCAATAAGAACCAGTTCACCGGTTCCATACCGGATTTATCGCAATGCACGGCTTTGTCTGACTTGCAGCTCAGGGATAACCAGTTAACTGGTGTGGTTCCCGCTTCATTGACAAGTCTTCCTAGTTTGAAGAAAGTTTCTCTGGATAATAATGAGCTTCAGGGGCCTGTGCCCGTGTTTGGGAAAGGTGTGAATGTTACTCTCGATGGGATTAATAGTTTTTGTCTTGATACTCCTGGGAATTGTGATCCCAGGGTGATGGTTTTGCTGCAGATTGCCGAGGCATTCGGGTATCCAATTCGGTTGGCAGAGTCGTGGAAGGGGAATGATCCGTGTGATGGTTGGAACTATGTTGTGTGTGCTGCCGGAAAGATTATTACTGTCAATTTCGAGAAACAGGGTTTGCAGGGTACCATCTCCCCTGCATTTGCCAATTTGACTGACTTGAGGACTTTGTTTCTCAATGGCAATAATTTGATCGGTTCTATACCTGATAGTTTGATCACTTTGCCTCAGCTTCAGACTCTTGATGTGTCTGACAACAACCTCTCTGGATTGGTTCCTAAGTTCCCACCAAAGGTGAAGTTGGTGACTGCGGGAAATGCTTTGCTTGGGAAACCCCTTAGTCCTGGAGGTGGACCAAGTGGAACTACTCCTTCTGGGTCTTCGACCGGTGGAAGTGGTGGTGAATCCTCAAAGGGTAATTCTTCGGTGTCGCCAGGTTGGATTGCTGGTATAGTTGTTATTGTGTTGTTTTTTATTGCAGTGGTGTTGTTTGTGTCTTGGAAGTGTTTTGTCAACAAGCTGCAGGGGAAGTTCAGTAGGGTTAAAGGTCATGAAAATGGGAAAGGAGGCTTTAAACTTGATGCTGTCCATGTTTCTAATGGATATGGTGGTGTTCCAGTTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACCTTCATGCTTTAGATGGTCCAACATTTTCTATCCAAGTTCTTCGACAAGTGACGAATAATTTCAGCGAGGAGAACATTTTAGGCAGGGGAGGGTTTGGAGTAGTTTATAAGGGGGTGTTGCATGATGGAACAAAAATTGCTGTTAAGAGGATGGAATCTGTTGCAATGGGGAACAAAGGTCAGAAAGAGTTCGAAGCAGAGATTGCACTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTCTAGGGTATTGCATCAATGGCAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGTACATTAACACAGCACCTGTTTGAGTGGCAGGAGCATGGGTATGCTCCTTTGACTTGGAAGCAAAGGGTAGTAATAGCTTTGGATGTAGCGCGGGGGGTGGAATACTTGCACAGTTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATACTACTAGGCGATGACATGAGAGCAAAGGTTGCTGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTCTGATGGAACTTATCACCGGTAGAAAGGCATTGGATGATACTGTGCCAGATGAAAGGTCTCACTTGGTGACATGGTTCCGTAGGGTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAATCCAGATGAGGAAACCATGGGAAGCATATATACAGTGGCCGAGCTGGCAGGCCATTGCACTGCTCGCGAACCATACCAAAGGCCGGATATGGGTCATGCAGTGAACGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCTACTAGCCATGATGAAGAAGAGGAAGACGGCTCTGGCGGTGACCTTCATATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCAACGAAGGCACTTCCTCAATATTTAATGACATTTCCATCTCACAAACCCAATCAAGCATCTCCTCTAAACCTGCAGGGTTTGCAGACTCCTTTGATTCAATGGATTGCCGTTAA 2763 0.4799 MSLPKTLLSLFLLLTIPLVTADDAAVMSNFLKSLTPPPSGWSETTPFCQWKGIQCDSSSHVTSISLASHSLTGTLPSDLNSLSQLRTLSLQDNSLTGTLPSLSNLSFLQTVYLNRNNFSSVSPTAFASLTSLQTLSLGSNPALQPWSFPTDLTSSSNLIDLDLATVSLTGPLPDIFDKFPSLQHLRLSYNNLTGNLPSSFSAANNLETLWLNNQAAGLSGTLLVLSNMSALNQSWLNKNQFTGSIPDLSQCTALSDLQLRDNQLTGVVPASLTSLPSLKKVSLDNNELQGPVPVFGKGVNVTLDGINSFCLDTPGNCDPRVMVLLQIAEAFGYPIRLAESWKGNDPCDGWNYVVCAAGKIITVNFEKQGLQGTISPAFANLTDLRTLFLNGNNLIGSIPDSLITLPQLQTLDVSDNNLSGLVPKFPPKVKLVTAGNALLGKPLSPGGGPSGTTPSGSSTGGSGGESSKGNSSVSPGWIAGIVVIVLFFIAVVLFVSWKCFVNKLQGKFSRVKGHENGKGGFKLDAVHVSNGYGGVPVELQSQSSGDRSDLHALDGPTFSIQVLRQVTNNFSEENILGRGGFGVVYKGVLHDGTKIAVKRMESVAMGNKGQKEFEAEIALLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWQEHGYAPLTWKQRVVIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQILNPDEETMGSIYTVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHDEEEEDGSGGDLHMSLPQALRRWQANEGTSSIFNDISISQTQSSISSKPAGFADSFDSMDCR 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01001 920 Gene3D Transferase(Phosphotransferase) domain 1 648 868 - -
Gma08g01001 920 PANTHER OSJNBA0070M12.3 PROTEIN 7 920 - -
Gma08g01001 920 Gene3D Phosphorylase Kinase; domain 1 537 647 - -
Gma08g01001 920 Pfam Leucine rich repeat N-terminal domain 22 56 IPR013210 -
Gma08g01001 920 Pfam Leucine rich repeat N-terminal domain 323 355 IPR013210 -
Gma08g01001 920 SUPERFAMILY Protein kinase-like (PK-like) 549 855 IPR011009 -
Gma08g01001 920 SUPERFAMILY L domain-like 24 430 - -
Gma08g01001 920 ProSiteProfiles Leucine-rich repeat profile. 84 106 IPR001611 GO:0005515
Gma08g01001 920 Pfam Protein kinase domain 571 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g01001 920 MobiDBLite consensus disorder prediction 440 471 - -
Gma08g01001 920 SMART LRR_typ_2 405 427 IPR003591 -
Gma08g01001 920 SMART LRR_typ_2 381 402 IPR003591 -
Gma08g01001 920 SMART LRR_typ_2 82 104 IPR003591 -
Gma08g01001 920 SMART LRR_typ_2 275 298 IPR003591 -
Gma08g01001 920 SMART LRR_typ_2 179 202 IPR003591 -
Gma08g01001 920 SMART LRR_typ_2 105 128 IPR003591 -
Gma08g01001 920 SMART serkin_6 570 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g01001 920 Gene3D Ribonuclease Inhibitor 319 442 IPR032675 -
Gma08g01001 920 Pfam Leucine Rich Repeat 181 201 IPR001611 GO:0005515
Gma08g01001 920 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 7 920 - -
Gma08g01001 920 MobiDBLite consensus disorder prediction 448 471 - -
Gma08g01001 920 Gene3D Ribonuclease Inhibitor 21 315 IPR032675 -
Gma08g01001 920 CDD STKc_IRAK 576 849 - -
Gma08g01001 920 Pfam Leucine rich repeat 83 141 IPR001611 GO:0005515
Gma08g01001 920 Pfam Leucine rich repeat 377 418 IPR001611 GO:0005515
Gma08g01001 920 MobiDBLite consensus disorder prediction 901 920 - -
Gma08g01001 920 ProSiteProfiles Protein kinase domain profile. 570 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01001 Gma-Chr8 8448985 8452581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01001 61 864 Receptor kinase-like Gene Family AT1G55610 31.910 1.40e-92 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gma08g01001 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01001 - - gmx:547710 1731.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01001 08 8448985 8452581 Gma08g01001 08 8448985 8452581 ECH