Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00980 ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTTTAAGCAGCAAAGAGCTGGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAGGAGCACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAAGAGATGGGATATGGCAGGAATCCAGCTCAAACTCATGGTGAAGCCCTCTTTCAACAAATGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAGCAATTACATGGCAGGATGGCTACCATAG 735 0.4707 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEEMGYGRNPAQTHGEALFQQMECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00980 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma08g00980 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 231 - -
Gma08g00980 244 Coils Coil 154 174 - -
Gma08g00980 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma08g00980 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma08g00980 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma08g00980 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma08g00980 244 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gma08g00980 244 ProSiteProfiles K-box domain profile. 91 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g00980 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gma08g00980 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma08g00980 244 Pfam K-box region 93 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g00980 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma08g00980 244 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Gma08g00980 244 Coils Coil 128 148 - -
Gma08g00980 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00980 Gma-Chr8 8287481 8294571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00980 1 244 MADS-box Gene Family AT1G24260 74.494 2.11e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma08g00980 K-box 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00980 - - gmx:100778931 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00980 08 8287481 8294571 Gma08g00980 08 8287481 8294571 ECH
Gma05g01498 05 36856858 36864642 Gma08g00980 08 8287481 8294571 GST
Gma08g00980 08 8287481 8294571 Gma18g00047 18 392264 397142 PCT
Gma08g00980 08 8287481 8294571 Gma11g02534 11 40442490 40446616 PCT