Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00979 ATGGGGAAGAAGAAGGTGGAGATAAAGCGAATCGAGAACAAAAGCACTCGGCAGATAACATTCTCCAAGAGGCGCAATGGATTGATGAAGAAAGCTCGCGAGCTATCCATTCTCTGCGATGCGAAGGTGGCGCTGCTCATCTTCTCCAGCACCGGAAAGCTCTACGAGCTCTGCAACGGTGACAGTTTGGCCGAGGTCGTGCAGCAATATTGGGATCATTTAGGAGCGAGCGGTACTGACACAAAGTCGCAGGAACTATGCTTTGAAATTGCAGATATCTGGTCTGGTTCAGCGTTTTCTCAAATGATCAAAAGGCACTTCGGTGTTTCTGAACTTGAGCATCTGAGTGTGTCTGACCTTATGGAACTAGAGAAACTGACTCATGCTGCTCTTTCGCGAATCAGATCAGCAAAGATGCGATTGATGATGGAATCTGTAGTGAATCTTAAGAAAAAGATTGAGGCACTAGAAAAAACTAATGACGTCAATAACGTGGTGACACGGTCTATTGACTGTGATCAAACAGATGGGGTGACGCATAATCTGTTCCCAGCTCTCGGCTCTGGTCTTCAAACTGCTCCGGTCACCGCCGATCCTGCCGGAGCCTCCCAAGAGCTTCATTAA 624 0.476 MGKKKVEIKRIENKSTRQITFSKRRNGLMKKARELSILCDAKVALLIFSSTGKLYELCNGDSLAEVVQQYWDHLGASGTDTKSQELCFEIADIWSGSAFSQMIKRHFGVSELEHLSVSDLMELEKLTHAALSRIRSAKMRLMMESVVNLKKKIEALEKTNDVNNVVTRSIDCDQTDGVTHNLFPALGSGLQTAPVTADPAGASQELH 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00979 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma08g00979 207 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Gma08g00979 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma08g00979 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma08g00979 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma08g00979 207 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gma08g00979 207 PANTHER BNAC02G43470D PROTEIN 1 163 - -
Gma08g00979 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gma08g00979 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 163 - -
Gma08g00979 207 Pfam K-box region 80 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g00979 207 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Gma08g00979 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma08g00979 207 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00979 Gma-Chr8 8270400 8285514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00979 1 160 MADS-box Gene Family AT2G03710 46.061 1.05e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma08g00979 K-box 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00979 K09264 - gmx:100778392 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00979 08 8270400 8285514 Gma08g00979 08 8270400 8285514 ECH