Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00978 ATGGGCATTTCACTAAATTCACAAGCCACAACAGAGAGTGTATACAATGCTGCCTTGGCCCTAGGAATTGCAAATCAGCTAACCAATATACTTAGAGATGTTGAAGAGGATGCTAACGGAGGAAGAGTGTATCTTCCACAAGATGAGTTGGCTCAAGCAGGGCTTTCAGATGAAGACATATTTGCTGGTAAGGTGACAGACAAGTGGAGGAACTTCATGAAGAACCAAATCAAAAGGGCAAAAATGTTTTTTGATGAGGCAAAAAAGGGGGTGACTGAGCTTAATGAAGCTAGCAGATGGCCAGTCTTCCTTTATGATGATATCATTGCTATGCAGATCAGCGAGATATTCAGCCCACCTCTGCGGTTCCAAAAATGCTCTGTGTCCGGTTCTACTACCTGTACTTGTAGCTTTTTATTCCTCGGATTCAACACCATGACACCTGGTTACGAGTATGATATTAATGATCTGCATCAAGAGGCTCAAGCCAGATGGTTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGTTCACCCAAGAGGTCCCACAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAACAAAAGAATCCTGCGATACTTCCGTAGAGATGGTCATAACTGGCATAAGAAAAGTGGTGGAAGAACTGTGGGAGAAGCACACGAAAGGCTGAAGGTTCTAAATGTTGAAGCCTTAAATTGTTACTATGCACGCGGAGAGCAGAACCCTGCTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTATAGGAACACAAGTGAGGGAAAGCTAAGTTCTGGAGCTGGGGCACAATTGTCACCAAGTTCTTCTGTCTATACTCAGAGTCCTAGCCCATATTCTACTCAGAATCCAGGGTCAACATCCATACTTGGTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGGTCTACAAAAGTTACATCTGAGATATTCGTTCTGAACAATAAAATGGGTCACATGGATTGGGCAGATACAGAATCAGGAACCTCATCTGAACTCGAGGTTACTCAAGCTTTGCGCCGATTGGAGGTACAGTTAAGTTTGAATGAGGACAACTTTGAAGATATTGTTTCCTTCGGCAGTAAGCATGAAACTGTTCATGATTCAAATCCCAAGCACGATCAAAGGGTGATCAGCAATCAAGAGCAATCTGCAGCTTTCTCTAGACCCGATGATCAAGGGCTATTTTATGATGGATGTAATGGAAGGCAAGtgtttattgttattggtgatggtggtgaattttatcatgaattaatagatcatggttaccctgatgcaaatgaaaaggctttatggacagagcagctggaatcacataagtcctcatctgcagtcaagttacctcagaaaaatgtatacatgccagctgaaaatgaaaattcagtatcttctgcaagaagggtaccagtttccaaccaggaaaacagtcactggctcaacttcaactgtaataattctgaaaactctgttttctcacaacctcaaggtgttgatgaagtcaaatttcctgcctattcttctatgttggaaacacaagtaattaattctgactactatgaaacattgtttgaccaaagccaaattggagcaccaccagatgcaaattcaagcttgactgttgcacaaaaacagaaatttactattaagactatctccccagaatggggttatgccaccgagactaccaaggtcattgttgttgggtcttttctctgtcatccctcggattctgcatgggcttgtatgtttggtgatgttgaagttcctattgagataattcaggatggtgtaatctcttgtgaagctccatCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACTGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCATGATAAGACCAATAGTTGCACTCGATGTACTCAATCCGAAACAGAAGCCACTAGAAGTCCAGAAGAGCTGTTATTACTTGTTAGATTAGGGCAGATGCTTCTTTCTGCATCAACAATAAAGAATGACAACATAGAATCTGGAATTCCTCTAATAAAACCGAAAGCTGATGATGATTCATGGAGCCATATTATAGATGCTCTTCTAGTTGGCAGTGGAACGTCGAGTGGTACTGTTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGTTTCAACAGTGGCTTTCTTTCAGATCACGGGAAAAAGATGAAGAGACAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTAGGTTTTGAGTGGGCCTTGAACCCTATTCTCACGTGTGGAGTTAATATAAATTTCCGTGACATCAATGGATGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAAATGCACAAGATCCAACTGGTAAAACTGCTGCATCTATTGCAGCCAGCAGTGGGCACAAGGGACTGGCAGGGTATCTTTCAGAGATAGCTGTAACAAGCCATTTGTCATCGCTTACACTGGAAGAGAGTGAATCATCTAAAAGTTCTGCTTATCTTCAGGCGGATAGGACTGTTAACAGTGTCTCCAAGGAAAATCTTACTGCCAATGAGGATCAGGCGTCACTCAAAGATACCTTGGCTGCTATCAGAAATGTAACTCAGGCAGCTGCGCGGATACAATCTGCTTTTCGCTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAACTGCTAGTACAGGTGGCATTGGTACCATTTCAGAGATTTCTGCTATGTCAAAACTTGCGTTTCGGAACTCACACGAATATAATTCAGCTGCTTTATCCATTCAGAAGAAATATCGAGGTTGGAAAGGTCGTAGAGATTTCTTAGCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCTTGGACAAGGTTGTCCTACGATGGAGGAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACATCAATGAAAATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAATTAGATGTAGAAATTGAAGAGGCTGTTTCAAGGGTGCTGTCCATGGTTGACTCACCGGATGCTCGTGAGCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGACGAAGCATCATTATCAACTTCTGTAGGAGATGACTTATTTATGGATGATTTTTATCCATTTCCCTAA 3381 0.3543 MGISLNSQATTESVYNAALALGIANQLTNILRDVEEDANGGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKNQIKRAKMFFDEAKKGVTELNEASRWPVFLYDDIIAMQISEIFSPPLRFQKCSVSGSTTCTCSFLFLGFNTMTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQFTQEVPQQPTSGSLFLFNKRILRYFRRDGHNWHKKSGGRTVGEAHERLKVLNVEALNCYYARGEQNPAFQRRSYWMLDPAYEHIVLVHYRNTSEGKLSSGAGAQLSPSSSVYTQSPSPYSTQNPGSTSILGDSYEPNQSFSSPGSTKVTSEIFVLNNKMGHMDWADTESGTSSELEVTQALRRLEVQLSLNEDNFEDIVSFGSKHETVHDSNPKHDQRVISNQEQSAAFSRPDDQGLFYDGCNGRQVFIVIGDGGEFYHELIDHGYPDANEKALWTEQLESHKSSSAVKLPQKNVYMPAENENSVSSARRVPVSNQENSHWLNFNCNNSENSVFSQPQGVDEVKFPAYSSMLETQVINSDYYETLFDQSQIGAPPDANSSLTVAQKQKFTIKTISPEWGYATETTKVIVVGSFLCHPSDSAWACMFGDVEVPIEIIQDGVISCEAPSHLPGKVTLCITSGNWESCSEVREFEYHDKTNSCTRCTQSETEATRSPEELLLLVRLGQMLLSASTIKNDNIESGIPLIKPKADDDSWSHIIDALLVGSGTSSGTVDWLLEELLKDKFQQWLSFRSREKDEETGCSLSKKEQGIIHMVAGLGFEWALNPILTCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPNAQDPTGKTAASIAASSGHKGLAGYLSEIAVTSHLSSLTLEESESSKSSAYLQADRTVNSVSKENLTANEDQASLKDTLAAIRNVTQAAARIQSAFRSHSFRKRRAREATASTGGIGTISEISAMSKLAFRNSHEYNSAALSIQKKYRGWKGRRDFLALRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDINENEDEDILKVFRKQKLDVEIEEAVSRVLSMVDSPDAREQYHRMLEKYRQAKAELAGTSDEASLSTSVGDDLFMDDFYPFP 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00978 1126 SUPERFAMILY Ankyrin repeat 771 862 IPR036770 -
Gma08g00978 1126 Gene3D - 969 1018 - -
Gma08g00978 1126 Pfam IQ calmodulin-binding motif 995 1014 IPR000048 GO:0005515
Gma08g00978 1126 Pfam IQ calmodulin-binding motif 972 990 IPR000048 GO:0005515
Gma08g00978 1126 Gene3D Immunoglobulins 566 661 IPR013783 -
Gma08g00978 1126 ProSiteProfiles CG-1 DNA-binding domain profile. 154 280 IPR005559 GO:0003677
Gma08g00978 1126 Coils Coil 1086 1106 - -
Gma08g00978 1126 Pfam IPT/TIG domain 572 643 IPR002909 -
Gma08g00978 1126 ProSiteProfiles Ankyrin repeat profile. 801 833 IPR002110 GO:0005515
Gma08g00978 1126 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 150 1115 - -
Gma08g00978 1126 ProSiteProfiles Ankyrin repeat region circular profile. 801 827 - -
Gma08g00978 1126 ProSitePatterns Squalene and phytoene synthases signature 2. 21 46 IPR019845 GO:0016765
Gma08g00978 1126 Pfam Ankyrin repeats (3 copies) 783 861 IPR002110 GO:0005515
Gma08g00978 1126 Pfam CG-1 domain 160 273 IPR005559 GO:0003677
Gma08g00978 1126 SUPERFAMILY E set domains 572 655 IPR014756 -
Gma08g00978 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 959 1016 IPR027417 -
Gma08g00978 1126 SMART CG_1_2 157 275 IPR005559 GO:0003677
Gma08g00978 1126 ProSiteProfiles IQ motif profile. 970 999 IPR000048 GO:0005515
Gma08g00978 1126 SMART iq_5 918 940 IPR000048 GO:0005515
Gma08g00978 1126 SMART iq_5 969 991 IPR000048 GO:0005515
Gma08g00978 1126 SMART iq_5 992 1014 IPR000048 GO:0005515
Gma08g00978 1126 Gene3D Farnesyl Diphosphate Synthase 1 133 IPR008949 -
Gma08g00978 1126 Gene3D - 697 866 IPR036770 -
Gma08g00978 1126 ProSiteProfiles IQ motif profile. 993 1018 IPR000048 GO:0005515
Gma08g00978 1126 SMART ANK_2a 840 869 IPR002110 GO:0005515
Gma08g00978 1126 SMART ANK_2a 801 830 IPR002110 GO:0005515
Gma08g00978 1126 Pfam Squalene/phytoene synthase 13 104 IPR002060 GO:0009058
Gma08g00978 1126 ProSiteProfiles IQ motif profile. 920 948 IPR000048 GO:0005515
Gma08g00978 1126 MobiDBLite consensus disorder prediction 279 327 - -
Gma08g00978 1126 SUPERFAMILY Terpenoid synthases 10 113 IPR008949 -
Gma08g00978 1126 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 150 1115 - -
Gma08g00978 1126 CDD IPT 572 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00978 Gma-Chr8 8253771 8265662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00978 131 1116 CAMTA Transcription Factor Family AT1G67310 51.404 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gma08g00978 CG-1 2.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00978 K21596 - gmx:100814958 1871.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00978 08 8253771 8265662 Gma08g00978 08 8253771 8265662 ECH
Gma05g01493 05 36807577 36818222 Gma08g00978 08 8253771 8265662 GST
Gma18g00049 18 411440 419885 Gma08g00978 08 8253771 8265662 PCT
Gma11g02531 11 40418547 40428911 Gma08g00978 08 8253771 8265662 PCT
Gma08g00978 08 8253771 8265662 Gma18g00049 18 411440 419885 PCT
Gma08g00978 08 8253771 8265662 Gma11g02531 11 40418547 40428911 PCT