Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Gma08g00963
ATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACTAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCAGACGTTTTTGTCGAGGTGTTGGAAGGACAGCCCAGGCTAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAGTCAGCAAAATTCATTCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCACTGTACATTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCTCCGTGCCACATAGAGTTAATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGCCCGAGACTAAGTTAACAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGCGCTTCGTCATAG
546
0.4505
MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETKLTTSKKSQALRSGASS
181
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Gma08g00963
181
Gene3D
Ribosomal protein L22/L17
1
180
IPR036394
GO:0003735|GO:0005840|GO:0006412
Gma08g00963
181
MobiDBLite
consensus disorder prediction
153
167
-
-
Gma08g00963
181
TIGRFAM
uL22_arch_euk: ribosomal protein uL22
4
154
IPR005721
GO:0003735|GO:0006412|GO:0015934
Gma08g00963
181
Pfam
Ribosomal protein L22p/L17e
17
152
IPR001063
GO:0003735|GO:0005840|GO:0006412
Gma08g00963
181
PANTHER
60S RIBOSOMAL PROTEIN L17-2-LIKE
1
181
-
-
Gma08g00963
181
ProSitePatterns
Ribosomal protein L22 signature.
127
151
IPR018260
GO:0003735|GO:0005840|GO:0006412
Gma08g00963
181
Hamap
50S ribosomal protein L22 [rplV].
2
154
IPR005721
GO:0003735|GO:0006412|GO:0015934
Gma08g00963
181
MobiDBLite
consensus disorder prediction
153
181
-
-
Gma08g00963
181
SUPERFAMILY
Ribosomal protein L22
1
154
IPR036394
GO:0003735|GO:0005840|GO:0006412
Gma08g00963
181
CDD
Ribosomal_L22
15
151
IPR001063
GO:0003735|GO:0005840|GO:0006412
Showing 1 to 10 of 11 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Gma08g00963
Gma-Chr8
8117705
8120931
Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Gma08g00963
1
181
Cytoplasmic Ribosomal Protein Gene Family
AT1G27400
87.293
6.48e-117
327
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Gma08g00963
K02880
-
gmx:100816536
354.755
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Gma08g00963
08
8117705
8120931
Gma08g00963
08
8117705
8120931
ECH
Gma05g01480
05
36607389
36610019
Gma08g00963
08
8117705
8120931
GST
Gma11g02511
11
40264995
40266574
Gma08g00963
08
8117705
8120931
PCT
Gma08g00963
08
8117705
8120931
Gma11g02511
11
40264995
40266574
PCT
Showing 1 to 4 of 4 entries
Previous
1
Next
Select All
Download Selected Rows