Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00963 ATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACTAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCAGACGTTTTTGTCGAGGTGTTGGAAGGACAGCCCAGGCTAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAGTCAGCAAAATTCATTCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCACTGTACATTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCTCCGTGCCACATAGAGTTAATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGCCCGAGACTAAGTTAACAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGCGCTTCGTCATAG 546 0.4505 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETKLTTSKKSQALRSGASS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00963 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gma08g00963 181 MobiDBLite consensus disorder prediction 153 167 - -
Gma08g00963 181 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gma08g00963 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gma08g00963 181 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Gma08g00963 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Gma08g00963 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gma08g00963 181 MobiDBLite consensus disorder prediction 153 181 - -
Gma08g00963 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gma08g00963 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gma08g00963 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00963 Gma-Chr8 8117705 8120931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00963 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.293 6.48e-117 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00963 K02880 - gmx:100816536 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00963 08 8117705 8120931 Gma08g00963 08 8117705 8120931 ECH
Gma05g01480 05 36607389 36610019 Gma08g00963 08 8117705 8120931 GST
Gma11g02511 11 40264995 40266574 Gma08g00963 08 8117705 8120931 PCT
Gma08g00963 08 8117705 8120931 Gma11g02511 11 40264995 40266574 PCT