Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00958 ATGGATGTTGCTGAGGTTGAGGAAAATCTGTTTGCCGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGACTCTTTCTATAATCTATTGCAAAGTACTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGCAACAATAGAATTTGCACTTGATCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTGAATGACTCTAATGACAGCAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATTGCATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTCATAGTGAGGGCTCGATCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAACGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCAGTGTTCAGGGATCCATTGAGGATAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCAAAACTCAGTTGCTTTAATTTCAAACCAAATAATAGTAGGAAATCAGGGCAGATGCCTCTTCCGCCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTACCATTGCTTCTGGGCAAACTTATGAAAGGGTTTGGATAGAGAAATGGTTTAGTGATGGGCACAACAACTGCCCAAAGACCCAGCAGAAACTTTCACATCTTTGTTTGACTCCTAATTATTGTGTTAAGGGCCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGGGAATGGTATTATCAGAGTCTGAATCTACAAATTCAAAATCTATAGATAGTGTTAGCTATTGCAAGTTGAAGGGTGTCCTTGTGGTTCCTTTGGAAGAGAGCGGTATCTCAGAGGAATATGTGGAAAATGGAACTGAAAGTGTTTCTGCACAAGAGGAAGACTCTGAGCAGTATTTTAGCTTTCTGAAAGTCTTGACTGAGGGGAACAATTGGAGGAAGCAATGTGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTTTGCGTGAAGGTAGTTTGATGGCTCTGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAAAACTAGTTCTTATGGTTGTACAACTGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCGTGACTCAGGCTGTCCAGTTCCTAATCCAGCTTCTTCAATCTGACTCTGATGTTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCATGCCTCCTTTCATTTGGCATCATTAGTGGCTTACAATCCCTTCTTGTAGGCGAGGGGGATAGCATTTGGACAGAAAAATGTGTAGCTGTTTTGATAAATTTAGCAACTTCTCAAGTTGGAAGGGAGGAAATCGTATCAACTCCTGGACTCATCGGTGCATTGGCTTCAATATTGGACACCGGGGAGCTCATAGAACAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAATGTAGTGAGATGGTCCTGCAGGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGAACTCCAAGAGGTCAAGAAAAAGCTCAGAAACTCTTAATGTTGTTCCGAGAGCAGCGACGGGACCCTTCACCAGTTAAGACACATAAGTGCCCACCTGAAACTGCTAGTGATTTGTCTATGCCACCTGCTGAAATGAAACCGATATGCAAGTCGATTTTGAGAAGAAAGTCCGGGAGAGCTTTTAGCTTTTTCTGGAAAAACAAGAGCTATTCTGTATACCAGTGTTAA 2298 0.4156 MDVAEVEENLFAASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKLNDSNDSNELESFHQAATRLGIASSRAALAERRALKKLIVRARSEEDKRKESIIAYLLHLMRKYSKLFRNEFSDDNDSQGSAPCSPSVQGSIEDSVPGSHCQAFDRQLSKLSCFNFKPNNSRKSGQMPLPPEELRCPISLQLMYDPVTIASGQTYERVWIEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGMVLSESESTNSKSIDSVSYCKLKGVLVVPLEESGISEEYVENGTESVSAQEEDSEQYFSFLKVLTEGNNWRKQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSALREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGVTQAVQFLIQLLQSDSDVQCKQDSLHALYNLSTVPSNIPCLLSFGIISGLQSLLVGEGDSIWTEKCVAVLINLATSQVGREEIVSTPGLIGALASILDTGELIEQEQAVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPRGQEKAQKLLMLFREQRRDPSPVKTHKCPPETASDLSMPPAEMKPICKSILRRKSGRAFSFFWKNKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00958 765 MobiDBLite consensus disorder prediction 225 246 - -
Gma08g00958 765 Gene3D - 426 544 IPR011989 -
Gma08g00958 765 SUPERFAMILY RING/U-box 279 355 - -
Gma08g00958 765 SMART arm_5 455 499 IPR000225 GO:0005515
Gma08g00958 765 SMART arm_5 540 581 IPR000225 GO:0005515
Gma08g00958 765 SUPERFAMILY ARM repeat 428 706 IPR016024 -
Gma08g00958 765 CDD RING-Ubox_PUB 284 326 IPR045210 -
Gma08g00958 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Gma08g00958 765 Gene3D - 545 708 IPR011989 -
Gma08g00958 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Gma08g00958 765 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 750 - -
Gma08g00958 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Gma08g00958 765 MobiDBLite consensus disorder prediction 225 249 - -
Gma08g00958 765 PANTHER U BOX DOMAIN-CONTAINING 1 750 - -
Gma08g00958 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Gma08g00958 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00958 Gma-Chr8 8058855 8063131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00958 1 764 U-box Gene Family AT1G24330 65.938 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00958 - - gmx:100814944 1487.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01477 05 36541817 36546607 Gma08g00958 08 8058855 8063131 GST
Gma18g00077 18 619464 623262 Gma08g00958 08 8058855 8063131 PCT
Gma11g02504 11 40222143 40227526 Gma08g00958 08 8058855 8063131 PCT
Gma08g00958 08 8058855 8063131 Gma18g00077 18 619464 623262 PCT
Gma08g00958 08 8058855 8063131 Gma11g02504 11 40222143 40227526 PCT