Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00953 ATGGCGGCTAGCAGACATGGCGGTTACCGCGAAAACGAGTTCAAAGAGCGCGAATCAAAGTTAGAAGTTTCCAGACGCGGATTCGCGAATTCGAAAGAGGATTACGATCGTGTTAGGAATGGTGGTGGCGGTGAAGTTGTGAGGGGTGGGTCAAGGGATAGGGTTAGGGTGAGGCAGAAGGATATTAAGGAGAGGGAAGGTGTTAATGGTGGTGGTTATCGATCCTCTTCGAGTAGGAGTGACTCTGGCAGCAGTGGCCTTGGTCCTCGCCGGTGTGGTTTCTCTGTCAAGGCAGTTGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGTTCTGATGATGCTATTGAATCGGAACCGGGGTTAAAAGGCTCCGAGGTTGCAATGTTGGAAGAAACCAGGACTCTGTCTCCGCCAGTGCCGGAGAGAAAAAGGAAGTTTTCGCCCATAGTGTGGGATCAGGATGACAAGGAAGTCAACGAGCTATCCAAAGTTAGGGTTTCCGCCTCTGCGGTGAAGGTGGCTGCGCTTCCTCCTCCACCTCCGTTGCCTAAGGTGTTCCGTCAGTCACAGTCGCCGAATGCTCCGAATAGTGGAGTTGAAATAGTTCCTGTCAAGAACAGGGAAACTGAGGAACTTCAGTTGAATGCAGCATCTAATGTTACCTTGTCCTCTCCTTCAGGTTTGCATTCATTGCCCCCAAAAGGGAAGTGGGATAATGATCAGGAAGCTGAGCATCCAGAAGGCGAAGATTATGTTCCAACTCGCAATATATCGTCTTCAAGATGGGCAGCTGGAGATAACTCTCCTGTTGATGAGGGTGAGATCCTCAATGATGAGGAAATGCCCAAAAGTAGGTGGAGGGTGTCTCCTGATTTATTGGATGGTAGGCTAAGGAACAAGCTATTGAGCCCTGAGGAATCTAAGGTAGAAGGTATTGAAAGAGCTAGAGCCAGATCATCTGAATCTGAAGAAAGAGGTGCCCGTGGGAGAACTTCCAGTGGTGATGATTACCCCGGGTCAGAGAAGGATGACTACATGGAGGTTGATGTTCAAGGTGGGAAAAGTGAAACCAGTATCAGTCACTCAGACACGGATTCTGAAGATGAAGATGATGGCCGGGAGACTCCAGAACCTACTGCTCAACCTCAAAGAACATTCAACATGCTTCAGGGTtgtagaagtgttgatgagtttgagagactcaacaagatagatgaaggaacatatggtgttgtatatagggctagggataaaaagactggagaaattgtagcattgaagaaggtcaagatggagaaggaaaaagagggcttcccactgacttctctcagggaaataaacattcttctttcttttcaccacccatacatagttgacgttaaagaagtagtggtaggaagtagccttgatagtattttcatggtcatggaatatatggaacatgaccttaaaggactaatggaggcaatgaagcaaccttttagccagagtgaagtgaagtgcttgatgatccagcttttagaaggtgtgaagtatcttcacgacaactgggtgcttcatagggatttgaagacttcaaaccttcttctaaataataggggtgagctcaaaatttgtgattttggcttggctcgtcagtatgggagtcctttaaagccatacacacacctggtggtaactctttggtacagggcacctgaacttcttctgggggcaaaacagtattcaacagccattgacatgtggtctttaggttgtataatggctgagctattgtctaaggaaccactgtttaatgggagaacagagtttgatcaacttgacaagattttccggattcttggcacaccaaatgaaacaatttggcctgggttctccaaattacctggagtcaaggtcaattttgtcaaacaccagtacaatctcctgcgtaaaaagtttcctgccacatcattcactggatctcctgttctttctgattctggatttgatttgttgaacaagcttctaacttatgaccctgagaagcggatcactgccgaagatgctctaaatcatgagtggttccgtgaagttcctctccccaaaagtaaagaattcatgcctacatttcctgctcaacatgctcaggacagGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGTCGGAAGGAGTTGCAGCAGGGTGAAACAGGGACTGGTGGGATTTTTGGCTAA 2238 0.2833 MAASRHGGYRENEFKERESKLEVSRRGFANSKEDYDRVRNGGGGEVVRGGSRDRVRVRQKDIKEREGVNGGGYRSSSSRSDSGSSGLGPRRCGFSVKAVDREPGELSSESGSDDAIESEPGLKGSEVAMLEETRTLSPPVPERKRKFSPIVWDQDDKEVNELSKVRVSASAVKVAALPPPPPLPKVFRQSQSPNAPNSGVEIVPVKNRETEELQLNAASNVTLSSPSGLHSLPPKGKWDNDQEAEHPEGEDYVPTRNISSSRWAAGDNSPVDEGEILNDEEMPKSRWRVSPDLLDGRLRNKLLSPEESKVEGIERARARSSESEERGARGRTSSGDDYPGSEKDDYMEVDVQGGKSETSISHSDTDSEDEDDGRETPEPTAQPQRTFNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPYIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGRTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEDALNHEWFREVPLPKSKEFMPTFPAQHAQDRRVRRIYKSPDPLEEQRRKELQQGETGTGGIFG 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00953 745 Gene3D Phosphorylase Kinase; domain 1 383 481 - -
Gma08g00953 745 MobiDBLite consensus disorder prediction 8 41 - -
Gma08g00953 745 MobiDBLite consensus disorder prediction 175 386 - -
Gma08g00953 745 MobiDBLite consensus disorder prediction 71 85 - -
Gma08g00953 745 Gene3D Transferase(Phosphotransferase) domain 1 482 721 - -
Gma08g00953 745 MobiDBLite consensus disorder prediction 1 143 - -
Gma08g00953 745 MobiDBLite consensus disorder prediction 49 68 - -
Gma08g00953 745 MobiDBLite consensus disorder prediction 212 229 - -
Gma08g00953 745 SUPERFAMILY Protein kinase-like (PK-like) 391 696 IPR011009 -
Gma08g00953 745 MobiDBLite consensus disorder prediction 719 734 - -
Gma08g00953 745 ProSiteProfiles Protein kinase domain profile. 399 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00953 745 Pfam Protein kinase domain 399 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00953 745 CDD STKc_CDC2L1 393 690 IPR045267 GO:0004674|GO:0005524|GO:0006468
Gma08g00953 745 MobiDBLite consensus disorder prediction 277 351 - -
Gma08g00953 745 PANTHER CELL DIVISION PROTEIN KINASE 227 745 - -
Gma08g00953 745 MobiDBLite consensus disorder prediction 236 252 - -
Gma08g00953 745 MobiDBLite consensus disorder prediction 719 745 - -
Gma08g00953 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Gma08g00953 745 SMART serkin_6 399 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00953 745 PANTHER - 227 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00953 Gma-Chr8 8028014 8034526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00953 390 735 Core Cell Cycle Gene Families AT5G10270 45.304 5.74e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gma08g00953 Pkinase 1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00953 K08818 - gmx:100812800 1389.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01470 05 36495585 36498794 Gma08g00953 08 8028014 8034526 GST