Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00950 ATGGAGTCCGATTCCGACTCCGATGGATCTCACATCTCCGCAACTCCACCAAGAAAATCAACTCCATCACCACCACCACCACCACCTGTAGTAGTTTCAAAAAAATCCAGAATCAGAATCAAACCTTCAAAATCAAAACCAAAACCAGACCCTTCCGGATCCTCCAAAACCCAGTCCAAATCCGACCCGATCCAGCAAGCCACCCTTCTCTCCCTCCCCACCGATCTACCCTTCCAAATCCGGCGACCTTCCGACGCGCCGTCGATTTCGTACTCCATCGAAACCCTCCCCGCCGGCTACTTCTCCTCCTCCCATTCTGCTTCCTTCTCGAAAATTCGAAGACCTCTCCTCAATCTAGAACCTTCTGAAGTCGAACAACCGGTTTTTACTTCCGGCGCGTCTGACTCACGCGCCGAGGGCGCCGACTTGAGGAAGCGTGGGAAGAGCCAGCTTCCCAACCTGATTGGCTCCAGTGCGCCAATGCCGAGCGTGAAGCCGCGAACATCCGGAGCCGGCGAAGGGAACTTCGTGAAGCTCAACATGAATGGCAAGAGAAAGAAGTTCCTTAACAAGAGAGGGAAATTTGGCGGGAAAAGGTACAAGAGTTGGAGATTCAAATCGCAGCGCGAGAAGGAGGAGGAGCAAGAAGAGGCTGTTGGAGAGTTGAAACAGAGAGGGGGTTGTAAGAGGAGGGAGATTGATGGTGATGCAGTGGAGGAGGCTGCGACCGCAGCACGCAAGGAGCCTTCGGAGGAGAATTTGGTGAAGCTGTTGAGATTGGTTCATGGTTATGATTGCTTTCGAGATGGGCAGGTTGAGGCGATTAAAATGGTTCTTGCCGGGAAGTCTAGTGTGGTTGTTTTGCCGACCGGTGCAGGAAAGTCGCTGTGTTATCAGTTGCCTGCTGTGATCTTGCCTGGTGTTACATTGGTTGTTAGTCCATTGGTAGCTTTGATGATTGATCAGTTAAGGCAATTGCCTCATGTGATTATGGGTGGTCTTCTATCCAGCACTCAGACACCTGAAGAAGCCTCTGAATCACTCAAGCAGCTTCGTCAAGGGGGGATAAAGGTGCTTTTTGTTTCACCAGAGCGGTTTCTGAATGAGGAGTTTCTGTCTACTATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCATCTTTTATGAGACTTAGAGCATCTCTGCTTCATAAGACACTTAATGTTCGTTCTGTGCTTGCTATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTCTAGACATTCCTTCCACAAATCTTATTCAGAAGGCGCAGTTAAGGGACAATTTTCATTTATCAGTGTCTTTGCTTATATACTTTGAACATTTTGAACATAATAGAATGAAAGACCTACTGAATCTGATAAAGTCTCCTCCTTTTGTGGAAGTTCAAAGCATGATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAACAGATATTTGAATGATAACAACATCTTGGCAAAGAGTTATCATAGTGGTATCTCTGCAAAGGAACGTAGCTATGTACAGGAGTTGTTTAATTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTCGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGAAGGGATGGGAGGTTGTCGTACTGTCACCTATTTTATGATGATGAGACATATTTCAAACTTCGTAGTCTAACGCACAGTGAAGGAGTAGATGAATATGCAGTGAACAAATTTCTGCGTGAAGTGTTTCCTGCTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGATTTGATATGAAAGAAGAGGTGATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTACAGTACTTGCAGTTACATCCACAGATAAATGTAACTGGCACTTTGAATTTTCACAAGTCTCCTCCGCCATTACTTGCTCAGAAGGTTTCTGCTATAGCTGTAATTCTAAAAAGATCTGAAACCAAGCATGGGCAATATATTTTTGACATTCCAACTGTGGCAAATGATATGGGGGTTACAGCAGTGGAATTAATAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACTTGTTATCTCTATCAGCAGATATTACCCGATGGTTATCAGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATACGATGCAAGGTTGCAGTGGTGCCAATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCTCGATTTACACCAAGAGCCGTTGCGAGGGTAATGCATGGAATTGCAAGCCCAGCTTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGACTTTCAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAGAATTTTGTTGGAAAAGATACACTCTAG 2736 0.4393 MESDSDSDGSHISATPPRKSTPSPPPPPPVVVSKKSRIRIKPSKSKPKPDPSGSSKTQSKSDPIQQATLLSLPTDLPFQIRRPSDAPSISYSIETLPAGYFSSSHSASFSKIRRPLLNLEPSEVEQPVFTSGASDSRAEGADLRKRGKSQLPNLIGSSAPMPSVKPRTSGAGEGNFVKLNMNGKRKKFLNKRGKFGGKRYKSWRFKSQREKEEEQEEAVGELKQRGGCKRREIDGDAVEEAATAARKEPSEENLVKLLRLVHGYDCFRDGQVEAIKMVLAGKSSVVVLPTGAGKSLCYQLPAVILPGVTLVVSPLVALMIDQLRQLPHVIMGGLLSSTQTPEEASESLKQLRQGGIKVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLNVRSVLAMTATATTTTLDAIMSALDIPSTNLIQKAQLRDNFHLSVSLLIYFEHFEHNRMKDLLNLIKSPPFVEVQSMIIYCKFQYETDQINRYLNDNNILAKSYHSGISAKERSYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLTHSEGVDEYAVNKFLREVFPADKNSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLQLHPQINVTGTLNFHKSPPPLLAQKVSAIAVILKRSETKHGQYIFDIPTVANDMGVTAVELINQLYDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSADITRWLSEVENCKVRKMDAMFNAAYFALNLCDTMQGCSGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFQVVMEAAKEELKNFVGKDTL 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00950 911 Gene3D - 236 445 IPR027417 -
Gma08g00950 911 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 479 630 IPR001650 -
Gma08g00950 911 MobiDBLite consensus disorder prediction 206 225 - -
Gma08g00950 911 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 445 IPR014001 -
Gma08g00950 911 SMART helicmild6 503 584 IPR001650 -
Gma08g00950 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 602 IPR027417 -
Gma08g00950 911 PANTHER ATP-DEPENDENT DNA HELICASE Q4 54 834 - -
Gma08g00950 911 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 382 391 IPR002464 -
Gma08g00950 911 CDD SF2_C_RecQ 453 593 - -
Gma08g00950 911 Gene3D - 453 644 IPR027417 -
Gma08g00950 911 Pfam DEAD/DEAH box helicase 269 431 IPR011545 GO:0003676|GO:0005524
Gma08g00950 911 Pfam Helicase conserved C-terminal domain 488 583 IPR001650 -
Gma08g00950 911 PANTHER DNA HELICASE RECQ FAMILY MEMBER 54 834 - -
Gma08g00950 911 SMART ultradead3 263 459 IPR014001 -
Gma08g00950 911 MobiDBLite consensus disorder prediction 1 85 - -
Gma08g00950 911 MobiDBLite consensus disorder prediction 123 177 - -
Gma08g00950 911 Coils Coil 205 225 - -
Gma08g00950 911 CDD DEXHc_RecQ4-like 255 448 - -
Gma08g00950 911 MobiDBLite consensus disorder prediction 48 73 - -
Gma08g00950 911 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 257 611 IPR004589 GO:0004386|GO:0006310
Gma08g00950 911 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00950 Gma-Chr8 8006667 8014079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00950 489 616 Eukaryotic Initiation Factors Gene Family AT3G19760 29.231 1.59e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00950 K10730 - gmx:100811214 1689.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01466 05 36466821 36477342 Gma08g00950 08 8006667 8014079 GST