Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00937 ATGGACAATGGTTGCTTCTCTAGTTCTCCACGCCACGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCTAACATGGTTGAGAATCCTTGAAAAGATGCTCAAGAAGTGCTTATATGAAGTGACTACATGTTGTTTAGCAACAGAGGCCCTGAAAAAACTTCGTGAAAGGAAAGAAGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAACTTCTGGAGCAAGTAGGACTTGAGATGGATCTTCCTGTTATCATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAACATGTCTTTAGAAAAAGGATGCATGAGGCAAGAGATTTTGAAAGCCATGAGGGTTTTGACTTTGAGGGCATTCACTTAATGAGAAATGGATCAGATCACTCTGATGATGGTAACCTGTTTGCTGTAGAAGAAACTACGTCAATTAAGAAAAGAAAAGATGCAGATAACAAACATGATGACAAAGAATTTGGAGATCATTTTCCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTGAATCAAATCGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATCTGATGAATGTTCCATGGTTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCATCAAGTGGAATAAAGCACTCGGATTCACCTTCGAAAGATCTAGGAAGTTTTAGTTTTCTGAACACTGCAAACAAGCAACAAAATGATATTGCCACTGACAGCTTCAGTTATTCAGATGGAACTTTACTAATTCAGATGGATGCTACAAGTTATGAAGGTGATCTCAAGGGAATTGTGTCAGAGCCTACAACAGAAAAAAGAAGAGCTTCCACTAGTGAAATTCCGGATCCAAAGGTACAAAAAAGTTCGCAGAAGAGCCTCAACAAACCTTTTACATCTGTAGAGTCATCAGAAGCAAACCATGCAGTCTTTGATTGCACCATACCAACAGAATACTCTTGGAGTGAGTTTCCAAAAGGTCCACTCAAAGAAGAACAGAAGACACCTGTTCAATTAGAGGATAGCCTCTGCCAGTTGCCATTGCATGGTACACAGCATCACATTCAGATTGATCAATCACAATCAATTGCCTCAATTAATTCCAATCCCTCTATAACAGAAGAAGAGGTTGCTGCCAAATTAGAGACCAAACCTTTGTATGCTGGTTACGAGAGTGATTATGTGAATCCTGTGAGTTCAATAGGATCTGCAGTTGAAGCCTTTCGTAGTCAGTCCAAAAGCCTTATGGTGAGTGATCAATCTTCAGAGCCCACTTTCACCTCGAATTTGAGCTTGAAGACTCAGGGATTCAATCTAGATTGCATTTCTGATCTGGATTTTTACCAAAGGAACCTATTATTGGGTGGTGAGGTAGCTTCTGCACCTTTGGATGAGGACCTGAATTTCTTTTTGCTACAAAGTGAATGCTACAACATGAATTTTGGACTGCAGAATATAGATATGTCAGAGTATTATGATCCAAGGCTTACTGCTGAAGTCCCTAGCCACTTTTATGATTCAGCAGATTATTCATCGGTAGATCAAAGTCTATTCATTGCATGA 1752 0.3967 MDNGCFSSSPRHDAFPAGLRVLVVDDDLTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKEAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFDFEGIHLMRNGSDHSDDGNLFAVEETTSIKKRKDADNKHDDKEFGDHFPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDLGSFSFLNTANKQQNDIATDSFSYSDGTLLIQMDATSYEGDLKGIVSEPTTEKRRASTSEIPDPKVQKSSQKSLNKPFTSVESSEANHAVFDCTIPTEYSWSEFPKGPLKEEQKTPVQLEDSLCQLPLHGTQHHIQIDQSQSIASINSNPSITEEEVAAKLETKPLYAGYESDYVNPVSSIGSAVEAFRSQSKSLMVSDQSSEPTFTSNLSLKTQGFNLDCISDLDFYQRNLLLGGEVASAPLDEDLNFFLLQSECYNMNFGLQNIDMSEYYDPRLTAEVPSHFYDSADYSSVDQSLFIA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00937 583 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Gma08g00937 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 558 IPR045279 GO:0009736
Gma08g00937 583 MobiDBLite consensus disorder prediction 325 363 - -
Gma08g00937 583 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Gma08g00937 583 MobiDBLite consensus disorder prediction 345 363 - -
Gma08g00937 583 PIRSF RR_ARR_type-B 2 582 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gma08g00937 583 CDD REC_typeB_ARR-like 21 135 - -
Gma08g00937 583 SUPERFAMILY CheY-like 18 143 IPR011006 -
Gma08g00937 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 558 - -
Gma08g00937 583 Gene3D - 19 183 - -
Gma08g00937 583 SMART REC_2 19 131 IPR001789 GO:0000160
Gma08g00937 583 MobiDBLite consensus disorder prediction 329 344 - -
Gma08g00937 583 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Gma08g00937 583 Gene3D - 200 262 - -
Gma08g00937 583 SUPERFAMILY Homeodomain-like 201 260 IPR009057 -
Gma08g00937 583 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00937 Gma-Chr8 7901978 7906260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00937 13 269 Response Regulator Gene Family AT2G25180 55.769 9.60e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma08g00937 Response_reg 1.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00937 - K14491 gmx:100806394 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00937 08 7901978 7906260 Gma08g00937 08 7901978 7906260 ECH
Gma05g01454 05 36378344 36383105 Gma08g00937 08 7901978 7906260 GST
Gma18g00099 18 777617 781581 Gma08g00937 08 7901978 7906260 PCT
Gma11g02479 11 40051924 40055959 Gma08g00937 08 7901978 7906260 PCT
Gma08g00937 08 7901978 7906260 Gma18g00099 18 777617 781581 PCT
Gma08g00937 08 7901978 7906260 Gma11g02479 11 40051924 40055959 PCT