Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00896 ATGCCTATGGAACTAATTCAGAAGGAGAAAGCTCGCAAGACAACATTCAACAAGAGAAAGAAAGGATTATTGAAGAAAGCTTATGAATTTTCCATTCTTTGTGCGGTTGATGTTGGTATAATTATCTATGCCCCCAAGTTTCTTGATGAACCTGAAACATGGCCCCAAGACCAAGACTCAAGAGAGTTAAAACGTGTCATTCAAAAATATCAGAACACCACTAGTGACAGATGTCCTAAGGTGTATAGTGTGCAAGAGTATTTTAACGACAAAATGAAAAAGATTGAAGGTGAGATTTCCAAAGTGCACAAAGAGAAGATCAAACTCATGTATCCAACTTGGAATGACTCTTACAATACTCTTGGAGAGGAACAATTGAGGATGTTTGTTAGTATTTTGGATGCTAAGTTTGATGCTTGTAGTCAAAGGATGAATATGTTAAAGAAGGGAAAAGACAAAGTTGAGACACTTACTCCCTACATGACCTCAAATGTAGGTATGCAAAACATGTCTCAAACACAATTTTTCCCACCTAGTGATAACAAACAAGTAGCATTTTACCCATTTCAACTTAGCCAAAGTTCTCAACCTTCTATGTTCCATTTTGATAAAAGTTGTATGCAATTGATGGGAAAAAGTACAATGGTGGATTGGGCTGATCAAGTTGGTGTTGATGCTAATTGTGATCCCAAAATGGGTGTAGTACTAAAGGAGGATGGATCTGACAAAAATCAAAACTCCTACTACAATAGAAATCTTCCTTCTCACTTGCAATATGATGCAACTTTCCAGACCCTACCAGATCAACCAAGACAACCACCAGGATTTGAACTTAATGGTTTTTATGATTCAAATATGCTTCAACCTCATTTTTTTAACTACATGCATGGAAGAAACTAA 900 0.3644 MPMELIQKEKARKTTFNKRKKGLLKKAYEFSILCAVDVGIIIYAPKFLDEPETWPQDQDSRELKRVIQKYQNTTSDRCPKVYSVQEYFNDKMKKIEGEISKVHKEKIKLMYPTWNDSYNTLGEEQLRMFVSILDAKFDACSQRMNMLKKGKDKVETLTPYMTSNVGMQNMSQTQFFPPSDNKQVAFYPFQLSQSSQPSMFHFDKSCMQLMGKSTMVDWADQVGVDANCDPKMGVVLKEDGSDKNQNSYYNRNLPSHLQYDATFQTLPDQPRQPPGFELNGFYDSNMLQPHFFNYMHGRN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00896 299 ProSiteProfiles MADS-box domain profile. 1 46 IPR002100 GO:0003677|GO:0046983
Gma08g00896 299 CDD MADS_SRF_like 1 70 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma08g00896 299 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 6 45 IPR002100 GO:0003677|GO:0046983
Gma08g00896 299 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Gma08g00896 299 PANTHER MADS BOX PROTEIN 1 226 - -
Gma08g00896 299 Gene3D - 8 95 IPR036879 GO:0003677|GO:0046983
Gma08g00896 299 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 1 226 - -
Gma08g00896 299 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00896 Gma-Chr8 7420725 7421624 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00896 3 189 Type I MADS-box Gene Family AT5G55690 31.658 6.88e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma08g00896 SRF-TF 5.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00896 - - gmx:102667033 622.854