Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00894 ATGGGTCGTGGAAGAATACCTATGGAACTCATTAAGGAGGAGAAAGCCTGTGAAAAAACATTTCACAAGAGAAAAAAggggttattgaagaaagcttatgagttttccaccctttgtgcagttgatgttggcgttattatCTATGCTCCCAAATATCTTAATGAACCTGAAACATGGCCCCAAGACAAAGACTCAAGAGAGGTAAAACGTGTCATTCAAAAATATCATAACACCACTAGTGATAGGCATCCTAAGGTGTATGATGTGCAAGAGTATTTTAACGATAGAATGAAAAAGATTGAAAGTGAGATTTCCAAAGTGCACAAAGAGGAGATAAAGCTCATGTACCCAACTTGGAATGAGTCTTACAATACTCTTGGAGAGAAACAATTGAGGATGTTTGTTGGTATTCTGGATGCCAAACTTGATGCTTGTAATCAAAGGATGAATATGTTAAAGCAAGATTCAAAGGGAAAAGGAATAGCAAAATCGGACAAAATTGAGACGCTTACTCCCTACATGGCCTCAAATTTAGGTAGTCACCTAAATTTCATGTCTCAAACACAACTTTTCACTCCTAGTGATAACAATCAAGTAGCATTTTACCCATTTCAGCTTAGCCAAAGTTCTCAACCTTCTACGTTTCATGGTGGTCAAAGTTGTGTGCAATTGATGGAGAAAAATGCAATGGTGGATTGGGCTAATCAAGTTGGTGTTGGTGCTAATTGTGATCCCAAAATGGGTGTACTAAAGGAGGATCAATCTAACAAAACTCAAAACTCCTCACCATGCTACTACAATGGAAATATGCAAACTACATAG 822 0.3479 MGRGRIPMELIKEEKACEKTFHKRKKGLLKKAYEFSTLCAVDVGVIIYAPKYLNEPETWPQDKDSREVKRVIQKYHNTTSDRHPKVYDVQEYFNDRMKKIESEISKVHKEEIKLMYPTWNESYNTLGEKQLRMFVGILDAKLDACNQRMNMLKQDSKGKGIAKSDKIETLTPYMASNLGSHLNFMSQTQLFTPSDNNQVAFYPFQLSQSSQPSTFHGGQSCVQLMEKNAMVDWANQVGVGANCDPKMGVLKEDQSNKTQNSSPCYYNGNMQTT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00894 273 PANTHER MADS BOX PROTEIN 3 230 - -
Gma08g00894 273 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 230 - -
Gma08g00894 273 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma08g00894 273 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma08g00894 273 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma08g00894 273 MobiDBLite consensus disorder prediction 252 273 - -
Gma08g00894 273 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gma08g00894 273 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Gma08g00894 273 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Gma08g00894 273 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Gma08g00894 273 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00894 Gma-Chr8 7407305 7408126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00894 1 215 Type I MADS-box Gene Family AT5G55690 32.000 2.52e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma08g00894 SRF-TF 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00894 - - gmx:102666897 564.303