Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00853 ATGGTTACCCAACAACAGCCACAGCCACAGCTTCAGGTCCAGCCCACACCACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGACTGTCGGTATTGGTTGAGTGGCAATTGCTTGAATCCCAAATGTCCATTTCGACATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAACAGCGGCTGGTGGACCATCTGTACCCCCATCACAGATTCCAACAGCATCTGCAGCACATGCACCTTATAATTCCAGTAAACAAGCTGTCCCTTGCTATTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACCGATGTGCCTTCTTGCATGGTCCTCCTGCTCCTACTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTGACTATTCAAGGAGCCGAGAATCCAAGTTTTAAGAAGCCTTTTGTCAGCAATGAAAAGTATACTCAGGAAAGGAAAACTTCCCAAGGAAATTTTGCAAAGTCAGGTGGAGCTCCTGAAGCTAAACCTTCCCCCAAAATTGAAACTGCTCCTCAAAGAAATATGTTTGAATTGGAGAAGAAAGTGCCACCACCATCTGCAGAATTCAATAATGAGGCTTCTAGATTTAAGACAATTTCTCCACCAGTGACCAATGGGCCCATTGTGGCCCGGTCAAACCGTCTGCACCAAGCTCGTGTGCCAGATGATCACAATTTCCAGAGTGGCAAGGACAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGATGAATTCGGTAAAGCAAGAGGTCAAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGACATTCTGGTGATTATAGTTTAGCAGCTGATATTGATCGAGAAAGATTCCGTGGGCCTCAAGGTTATGAGTCATATGATCACATGCAGGAGCCATATGCTTGGGAGCAGCATAGGAAGCCCTCATCCCATTTAGGCAGGAGGACTCGTCGCAGATCTGACAGTCCTGAAAATGCTGAGGTCTCAGATCTTCGACATCATTTATCCAAGCGCAGGAAGGGTAATGGTTTGAAGTCGGTTATCAGTCATGATCATGCCCATGGGGGCCATGGTGAGGAACAGAGTCGCCGGTCCTTCTCTCGGAAGGACTCACTTGAGTTACCGCTGAATGAGAGCTCCCTTGGTAATCGCTTCCGGGGTAGAATAAAACTTCCGGAAAATGGTGACGGTGATCACCCAGAGAGGGAAGACGGGGGAAGATTTAGGAACAGATTACCTTCTGGAAGGTTGCCAGCCACTCACCATTTGTCACCTAGAGAGGGAAGGGTCCATGACAGAATAAGAGGAAGGTTGCAAGATGATGAGAGGAGAAACTCCAAGGATCGATTGATGGGGAGAGAACTACCGGGTGATAGGAGTGATTTTGCTGCGCCAAAAAGTCTTTCTGAACTTAAAAATGGGAGGAACACCGAGAATAGGGAGCAACAATCACTGGGAAGGAGAAGAAGTTTAAGGGACGATCACCCACAATCTGACGATGATTTTCTGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAGAGGAGCTGGAGCTGATTCAGACTCTGGGAATGGCAAATCATCTGACAATAAGAATGTAGAAGTTACCCATGGCTCGGATCCTATGTCTGTTGCAAACACACAAAATGGAGTGCTGTCTGAGACCAAGGAAGATGACAAGAATCTTCTGCTAAATAATGAAGAATCCAAGCTTGAGGTCACTGATGCAGCTGGAGGAGACAATGATGGTGAATATGAGGAGGGAATAGTGTACAATGAATCGGGTGAGGATCAGTATTATGAAGGTGATGATCAGAGAGATGCGGactatgagtatgaacaaggtgaagagggatactatgagtatgaacaaggtgaagagggTGAAAATCAAGAGGAAGATTACATGGAAGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCGTTCATTCATAA 2133 0.4444 MVTQQQPQPQLQVQPTPPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCPFRHPPLDGLLGTQATAAGGPSVPPSQIPTASAAHAPYNSSKQAVPCYFFQKGLCLKGDRCAFLHGPPAPTPSTGNKVAAQVPVTIQGAENPSFKKPFVSNEKYTQERKTSQGNFAKSGGAPEAKPSPKIETAPQRNMFELEKKVPPPSAEFNNEASRFKTISPPVTNGPIVARSNRLHQARVPDDHNFQSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLGHSGDYSLAADIDRERFRGPQGYESYDHMQEPYAWEQHRKPSSHLGRRTRRRSDSPENAEVSDLRHHLSKRRKGNGLKSVISHDHAHGGHGEEQSRRSFSRKDSLELPLNESSLGNRFRGRIKLPENGDGDHPEREDGGRFRNRLPSGRLPATHHLSPREGRVHDRIRGRLQDDERRNSKDRLMGRELPGDRSDFAAPKSLSELKNGRNTENREQQSLGRRRSLRDDHPQSDDDFLFEGPKPLSEILKEKRGAGADSDSGNGKSSDNKNVEVTHGSDPMSVANTQNGVLSETKEDDKNLLLNNEESKLEVTDAAGGDNDGEYEEGIVYNESGEDQYYEGDDQRDADYEYEQGEEGYYEYEQGEEGENQEEDYMEEEDGDDFAKKIGVVHS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00853 710 MobiDBLite consensus disorder prediction 676 710 - -
Gma08g00853 710 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Gma08g00853 710 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 12 710 - -
Gma08g00853 710 Pfam Zinc-finger containing family 26 80 IPR041686 -
Gma08g00853 710 MobiDBLite consensus disorder prediction 294 325 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 1 23 - -
Gma08g00853 710 Gene3D - 18 82 - -
Gma08g00853 710 Gene3D - 112 195 - -
Gma08g00853 710 SMART c3hfinal6 26 53 IPR000571 GO:0046872
Gma08g00853 710 SMART c3hfinal6 58 81 IPR000571 GO:0046872
Gma08g00853 710 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Gma08g00853 710 MobiDBLite consensus disorder prediction 89 109 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 339 643 - -
Gma08g00853 710 Pfam RNA-binding, Nab2-type zinc finger 121 141 - -
Gma08g00853 710 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 12 710 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 475 513 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 294 316 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 578 609 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 178 192 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 442 463 - -
Gma08g00853 710 ProSiteProfiles Zinc finger C3H1-type profile. 56 82 IPR000571 GO:0046872
Gma08g00853 710 MobiDBLite consensus disorder prediction 178 210 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 94 109 - -
Gma08g00853 710 ProSiteProfiles Zinc finger C3H1-type profile. 25 54 IPR000571 GO:0046872
Gma08g00853 710 MobiDBLite consensus disorder prediction 351 387 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 676 697 - -
Gma08g00853 710 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Gma08g00853 710 MobiDBLite consensus disorder prediction 397 424 - -
Gma08g00853 710 MobiDBLite consensus disorder prediction 526 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00853 Gma-Chr8 6982745 6986299 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma08g00853 zf-CCCH_3 7.1e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00853 - - gmx:100787836 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00853 08 6982745 6986299 Gma08g00853 08 6982745 6986299 ECH
Gma05g01368 05 35332577 35336866 Gma08g00853 08 6982745 6986299 GST