Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00838 ATGAGTGCTTCAAAATCAGGTGGTGGATCAGGTCGTGGTCAACAAGGTGATTACCATTGGCGTAATCGTCATGGTCGCGATAAGGTTGCTAGACTTGAGGAAATATTCAAGGAATGCACACATCCAAATGAAGTGCGACGCCGTCAAATAGGCGAGGAGCTCGGGCTTGATCCTGAACAAGTAAAATTTTGGTTTCAAAACAAGAAGACGCATATAAGGACTATAAATGAGCGATTAGATACAGATGCTCTTCGGCTTGAGAATGAAAGGATACAATCGGAAAACAACAAAATGAGAGAGACTTTGGAGAATCTTTCATGCGGATCTTGTGGGGGTCGAGCCATGGAACCAGTAAAGCATCAACTTTCCTTGCAAGTCTTAAGGGGGGAAAATATTCTATTAACTAAAGAGTGCGAGAGGATAACCTCACTTATGGCAAACAATGGGATAAATATTAATCCAGCACTACTTCCTGTCCTTCCTTCTTCTTCATCACATGATGCCTTAGGAGGAAGTTTACTAAATCAACCAGTTGGAATTCCTGCTCATAATCAATTCATTTCTAACCATGATAACCATTATATTCCTGCCGCAATTCCAACTCCTTTTCAGGATAATCCTATTGTTAGCCCTCCTAGCCATAATCAAGACATTAACCCTGCTCCTACCATTGATCAACACATTCCTACTCTTGATGATCCCACTCTCATTGGAGATAATTCTCCTTTGATTTCAAGTTTTGATTATAATATTCCAGCTTTGGTTACTGCTCTTGATCGAAATCTTCCCGCAATGATTCATCCTCACGATCAAAATAATAGCATTCCTTCCGCTGAGAAAGAAATTCATCAAGTGTCTAACAATTCAAACAATAACCTTTCTGCTCTAGAGTTGGATGCAGTTCAAATTCTAAACAATGATATGTTACCCCAACCAATGAAGAGCCTAAGTAAAGATATGGATAGTGTACAAATGTTGAAGATTGCAGAAGATGCAATGGAAGAATTGATGAAACTTCTCAGTTTGAACGAGCCCTTCTGGTTTAGATCTTTACTAGATGGGAAATTCAATCTTCGGCATGATTGCTACAAAAGGATATTTGGTAGGAGCAATTGCTTAAGTGGACCTCATGTACGAATGGAATCGTCGAAAGATTCACGAGTTGTGAAAATGAGTGGGGCACAACTCGTTGAAATGTTCTTAAATTCGGACAAATGGGTTGATCTATTCCCAACAATTGTTAAAAAAGCTCAAACAATTCAAGTACTTGAAAGTGGTTCATCAGGAAACCGAAATGGAGCTCTACAGTTGGTGAATGCAGAAATGCACATTCTTTCACATTTGGTTCCGAGTCGGGAATTTCTCTTCCTTCGTTATTGTAAACAAATTGAAGTAGGTATATGGGCCATAGGGGATGTGTCAATTGATTCTTCAACATACAAAACTACTGTTTCTCACGCTCGAAGGCTTCCATCTGGATGCCTGATTCAAGAAAAGTCGTCTGAGGGATTGTGCATGGTTTCATGGATGGAGCACGTGGAAGTGAATGAAAAGATGCAAACCCACAATCTTTTCAGAGATACTATTTGTGGGAATAACGCATATGGAGCAGACAGATGGGTTATGACCCTTGAAAGAATGTGCGAAAGGTTTGCAAGCTACTCAGCTAAAACTATACCTAGTTGTGAGACTGGAGGAGTTGTTAGATCGCCCGACGTAAAAAGAAACATAATGCACCTAACGCATCGTATGGTGAAAATGTTTTGTGGGAATTTGGACATGCAAGACAATCCAAATTTCCCAAATTTAACCCGGATGAACAACAATGGGGTTAAGTTATCCATTCGCGTGAATCACACAGGGCCAAATGAGCCTAAAGGCACGATCATTGGTGCTGCTATCTGCTTTCGGGTTCCACTCTCTCCACAAATTGTTTTCGATAACTTGATAGACAACAACAAACGAGCCAAGTGGGATACTCTATGCGATGGAAGTGCAGGGCACGAGATTCAACGAATCTCAACTGGAAGCAATCCTGGAAATTGTATTTCAATCATGCGGCCTTTCATCCCTAAAGAGAACAATATGGTGATTCTCCAAGAAAGTTATGTAGATGCTTTGGGATCCATGTTGGTATTCGCTCCTTTTTATATGGAAGGATTGGATTTGATCATGAAGGGAGAAGACTCATCACTGTTTCCGATTCTTCCCTCTGGCCTTACCATATCTTGGGATTACCAATCAAATAAAGTTCCTGAAGGACAATCTGGACAAGTTGGTCAATCAAGGGGTTCGTTGGTGACTCTAATGTTTCAACTTTTGGCATCCAGTACATCTAAAATAGATAATGTAGACATGAAATTAATAGGTTCTATTAATACACTCGTGACCTCAACTGTGGAGAAAATTAAAGATGCTTTGAATTGCTCAAATTCGAAGTAA 2442 0.4009 MSASKSGGGSGRGQQGDYHWRNRHGRDKVARLEEIFKECTHPNEVRRRQIGEELGLDPEQVKFWFQNKKTHIRTINERLDTDALRLENERIQSENNKMRETLENLSCGSCGGRAMEPVKHQLSLQVLRGENILLTKECERITSLMANNGININPALLPVLPSSSSHDALGGSLLNQPVGIPAHNQFISNHDNHYIPAAIPTPFQDNPIVSPPSHNQDINPAPTIDQHIPTLDDPTLIGDNSPLISSFDYNIPALVTALDRNLPAMIHPHDQNNSIPSAEKEIHQVSNNSNNNLSALELDAVQILNNDMLPQPMKSLSKDMDSVQMLKIAEDAMEELMKLLSLNEPFWFRSLLDGKFNLRHDCYKRIFGRSNCLSGPHVRMESSKDSRVVKMSGAQLVEMFLNSDKWVDLFPTIVKKAQTIQVLESGSSGNRNGALQLVNAEMHILSHLVPSREFLFLRYCKQIEVGIWAIGDVSIDSSTYKTTVSHARRLPSGCLIQEKSSEGLCMVSWMEHVEVNEKMQTHNLFRDTICGNNAYGADRWVMTLERMCERFASYSAKTIPSCETGGVVRSPDVKRNIMHLTHRMVKMFCGNLDMQDNPNFPNLTRMNNNGVKLSIRVNHTGPNEPKGTIIGAAICFRVPLSPQIVFDNLIDNNKRAKWDTLCDGSAGHEIQRISTGSNPGNCISIMRPFIPKENNMVILQESYVDALGSMLVFAPFYMEGLDLIMKGEDSSLFPILPSGLTISWDYQSNKVPEGQSGQVGQSRGSLVTLMFQLLASSTSKIDNVDMKLIGSINTLVTSTVEKIKDALNCSNSK 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00838 813 CDD homeodomain 21 73 IPR001356 GO:0003677
Gma08g00838 813 CDD START_ArGLABRA2_like 323 549 - -
Gma08g00838 813 Pfam START domain 328 550 IPR002913 GO:0008289
Gma08g00838 813 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 202 809 IPR042160 -
Gma08g00838 813 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 140 IPR042160 -
Gma08g00838 813 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Gma08g00838 813 Coils Coil 76 108 - -
Gma08g00838 813 SMART START_1 327 550 IPR002913 GO:0008289
Gma08g00838 813 ProSiteProfiles START domain profile. 318 553 IPR002913 GO:0008289
Gma08g00838 813 Gene3D - 21 72 - -
Gma08g00838 813 SUPERFAMILY Bet v1-like 571 718 - -
Gma08g00838 813 SUPERFAMILY Homeodomain-like 11 75 IPR009057 -
Gma08g00838 813 MobiDBLite consensus disorder prediction 1 24 - -
Gma08g00838 813 Pfam Homeodomain 21 73 IPR001356 GO:0003677
Gma08g00838 813 SUPERFAMILY Bet v1-like 319 552 - -
Gma08g00838 813 SMART HOX_1 17 79 IPR001356 GO:0003677
Gma08g00838 813 Gene3D - 327 528 IPR023393 -
Gma08g00838 813 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 15 140 - -
Gma08g00838 813 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 202 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00838 Gma-Chr8 6880946 6887321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00838 305 808 Homeobox Transcription Factor Family AT1G73360 41.440 1.47e-115 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma08g00838 START 1.7e-34 CL0209