Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00789 ATGGAAGGGGGAAACACCAAGAGAAAACAAAAGCGAGAGATCAAGAAAATTGAGGATAAAAAAGATCTTCAAAAAACTCTAGCAAAGAGAAAATGTGGCATTTACAAGAAAGCTAGTGAGTTAACAACTCTCTGTGGGGCAAAAGTTGATATGCTTATGTTTACTTCATCTGGAAAATGGTTGAGTTATGGGGAACCTTCTCACCAGGCAAATATCAGGTCTAGCGATGAAGAAAATGACCCTACAAAAGATGATATTAATGAGCCTGTGGAGGATCACGCCAAATCAAAGATTGATGAACTCTGTGAAAAAAATAAGGCACTTATACATCAATTGCACTATGAGGAAGAACGAGAGAATAAACTTGTTGAAATTATGAAGACAAGAAATACACATGGTTGGTGGGAGGCCAAAATTCAAGATCTTAATTGTGAAAAAGCTAAGGAACTGGAGGCATCTTTTGTGGAACTCAAAAAGAAATTGGAAAATGAGCTTTCAGTCAAGCAAGGAGACAATGGAAAATCATCTCATGGTAATGAGAAATTGAGAATACTGGTGAAAATGGCAATGAAAGGAGGAAAGGAAGAGATTCAAGAGAAGAAAGGAAAGCGAAAATCTGATAAAGAAAGTAGAAAGAACAGACAGAAGAAGAAGAAGAAGAACGAGGCCATGTCGGGATTCAGAGACGCTCGCTGTTTTCCGCGTCCAATCCTCGCTGTGAATCTCGCCCTCGCTCTTCTCCACGTTGTCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGTCAAAAAGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTACGTCATTTATTTGGCATTGACACTTGTTGCTGCCTGCAAGGGATGGACCTGTTGGTCGCATTCTTGTGGTTTTGTATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGATAACCCTTTGCTGGAAAAGACTTCAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGTTTTCCTTTTTGGTTTGCTCGTGTTGGAAATCGGCAAAAGATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGTTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGAATGCTTTTGTTGGGAGGAGCATTAGCATGTTATGGAATTCTATTATGCTTGAAAATGAGCAGAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTACTATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGATATCCCTATGCAGTATAACTGGCATCTGCGGCGTCTGAATGATGTTTACTCCTCGCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCATTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATATCTGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGACTACAGCAACAAGCATGCAGAATCAGCACTTTAAGATTCACATTCATATTGTTCCTACAAGTGTCATCGTACAAGACATCAAGAGCGAGTCCTATATGATTATGCGTTAA 1797 0.3951 MEGGNTKRKQKREIKKIEDKKDLQKTLAKRKCGIYKKASELTTLCGAKVDMLMFTSSGKWLSYGEPSHQANIRSSDEENDPTKDDINEPVEDHAKSKIDELCEKNKALIHQLHYEEERENKLVEIMKTRNTHGWWEAKIQDLNCEKAKELEASFVELKKKLENELSVKQGDNGKSSHGNEKLRILVKMAMKGGKEEIQEKKGKRKSDKESRKNRQKKKKKNEAMSGFRDARCFPRPILAVNLALALLHVVVAFLAFFQLLRIHMRNAQLGWTRQKVFHVLIGSSNLGYVIYLALTLVAACKGWTCWSHSCGFVFMAFPKVLFFAAFLLLLSFWVDLCHQADDDDDYEGSFCDNPLLEKTSNESNLASIDSHRKCFPFWFARVGNRQKIVILVTLLVFIIVVAFAVVIWIGLGKNPIDSEVAARIYLYLSAIGMLLLGGALACYGILLCLKMSRVRAEKPSSEMWKVAGLTIVSVLCFTSSSCVELLTDIPMQYNWHLRRLNDVYSSLLLILYYFVGSSIPSALVLWVMRELPPEEAASISEESSTIAFVADSSIAIHHPQRWTTATSMQNQHFKIHIHIVPTSVIVQDIKSESYMIMR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00789 598 Gene3D - 19 126 IPR036879 GO:0003677|GO:0046983
Gma08g00789 598 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 62 IPR002100 GO:0003677|GO:0046983
Gma08g00789 598 PANTHER OS01G0751300 PROTEIN 228 572 - -
Gma08g00789 598 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 1-LIKE ISOFORM X1 228 572 IPR040226 -
Gma08g00789 598 Pfam THH1/TOM1/TOM3 domain 240 340 IPR009457 -
Gma08g00789 598 Pfam THH1/TOM1/TOM3 domain 393 537 IPR009457 -
Gma08g00789 598 Coils Coil 144 167 - -
Gma08g00789 598 MobiDBLite consensus disorder prediction 193 223 - -
Gma08g00789 598 Coils Coil 7 27 - -
Gma08g00789 598 MobiDBLite consensus disorder prediction 65 88 - -
Gma08g00789 598 SUPERFAMILY SRF-like 8 72 IPR036879 GO:0003677|GO:0046983
Gma08g00789 598 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Gma08g00789 598 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Gma08g00789 598 MobiDBLite consensus disorder prediction 71 88 - -
Gma08g00789 598 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Gma08g00789 598 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Gma08g00789 598 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00789 Gma-Chr8 6461074 6474895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00789 1 170 Type I MADS-box Gene Family AT1G28450 35.955 6.39e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma08g00789 DUF1084 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00789 - - gmx:100819031 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00789 08 6461074 6474895 Gma08g00789 08 6461074 6474895 ECH
Gma05g01309 05 34769175 34777309 Gma08g00789 08 6461074 6474895 GST