Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00724 ATGAAACAGTGGCCTGAAGATTTCAGTTCCATGACGATTATGAGAGATCATGTGACACTCACAATTGGAGAGAATGGCATTGGCAATGGGGTTGTTCAGAATGGTACAGAAAATGGAGAAAGAAAGATAGTGCTTGGAAGAAATATTCACACCACGTGCCTTGAAGTCACTGAGCCTGATATAGATGATGAGGTTACTGGGGAAAGGGAAGCTTATATGGCAGGCGTGTTGGCTAAATACAAAAAATCTCTGACTGAAAGGACCAACTATCATTTAGGATACCCCTATAATTTGaattttgactatgatgcactctctcagcttcagcatttttccatcaacaacctgggggatcccttcattgaaagcaattatggtgtccactctaggcagtttgaggttggtgttttggactggttcgcgcggttgtgggaactcgagaaagatgagtattggggctatataacaaactgtggcacagaaggcaatctccatggcatcctagtggggagagaggttttccctgatgggattttatatgcctcacaggaatcacattattctgttttcaaagctgctagaatgtacagaatggaatgtgtgaagattaacactctttggtctggtgagattgattgtgatgattttaaggccaagcttctttgtcacaaggacaagccagcaattgtgaatgtgaacatagGTACAACTGTGAAGGGAGCAGTGGATGACCTTGATCTGGTAATAAAGAAACTAGAAGAGGCAGGATTTTCACAAGAcaggttctatatccattgtgatggggctttgtttggtctcatgctgccttttgtcaaacgtGCTCCAAAAATTTCATTCAAGAAACCAATTGGTAGTGTGAGTGTCTCAGGCCACAAATTCGTGGGGTGCCCCATGCCCTGTGGCGTGCAGATAACACGGTTGGAGCACGTCAACGCTCTTTCCAGAAACGTCGAATACCTGGCTTCAAGGGACGCCACAATCATGGGAAGCAGGAACGGGCACGCCCCCATATTCCTCTGGTACAGCCTCAACATGAAAGGCTACAGAGGCTTCCAGAAAGAGGTGCAAAAGTGTTTGAGGAATGCACACTACTTCAAAGATCGCCTTGTGGATGCTGGCATTGGAGCGATGCTGAATGAGCTCAGCAGCACCGTTGTGTTTGAGAGGCCTCACGATGAAGGGTTTGTGCACAAGTGGCAGCTTGCGTGCCAAGGAAACGTTGCACATGTTGTGGTGATGCCTAATGTCACCATTGAGAAACTTGATGATTTTCTCAATGAGCTTGTGCAGAAGCGTGCTGTGTGGTTTAGAGATGGGAACTGTCAACCCTATTGTATAGCTTCTGATGTAGGACAGGAAAATTGCCTCTGTGCTCTGCACAGGTAA 1407 0.3085 MKQWPEDFSSMTIMRDHVTLTIGENGIGNGVVQNGTENGERKIVLGRNIHTTCLEVTEPDIDDEVTGEREAYMAGVLAKYKKSLTERTNYHLGYPYNLNFDYDALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKINTLWSGEIDCDDFKAKLLCHKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSQDRFYIHCDGALFGLMLPFVKRAPKISFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHVNALSRNVEYLASRDATIMGSRNGHAPIFLWYSLNMKGYRGFQKEVQKCLRNAHYFKDRLVDAGIGAMLNELSSTVVFERPHDEGFVHKWQLACQGNVAHVVVMPNVTIEKLDDFLNELVQKRAVWFRDGNCQPYCIASDVGQENCLCALHR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00724 468 PANTHER - 1 468 - -
Gma08g00724 468 Gene3D Aspartate Aminotransferase, domain 1 344 439 IPR015422 GO:0003824
Gma08g00724 468 Pfam Pyridoxal-dependent decarboxylase conserved domain 178 387 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gma08g00724 468 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 292 313 IPR021115 GO:0016831
Gma08g00724 468 Gene3D - 125 339 IPR015421 GO:0003824
Gma08g00724 468 PANTHER SERINE DECARBOXYLASE 1 468 - -
Gma08g00724 468 SUPERFAMILY PLP-dependent transferases 84 437 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00724 Gma-Chr8 5940576 5943887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00724 191 374 Calmodulin-binding Proteins AT1G65960 26.425 6.33e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00724 K25193 - gmx:100792053 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00724 08 5940576 5943887 Gma15g00484 15 4059852 4063901 PCT
Gma15g00484 15 4059852 4063901 Gma08g00724 08 5940576 5943887 PCT