Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00718 ATGAGACACACATCGGTTTATAATTTTTCTTTTCCACAAACTGTTTTCCTTCCGTGCGTTTACTCGGAACTACTCTTCCACTCTTCGTTTAAAATGTCTGACGTGGAAGAGTATCGTTGTTTCATTGGTGGCCTTGCGTGGTCAACATCTGATAGAAAGTTAAAGGATACGTTTGAAAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGACGAGGCTATTGATGCTATGAATGGGATGGATTTAGACGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGGTGATGGTGATCGCTACCGGGATCGTGGTCGTGATCGTGACCGAGATCATGGAGGTGGAGGTGGCCGAGGATCTAATGGTGGTGAATGCTTtaagtgtggaaaacctggtcattttgctagggagtgccctagtgaAGGGTCCAGGGGAGGAAAGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGCAGTGGTGGTGGTTATGGACCAGATAGAGCAGATCGTTCTTCAGGGGGGCGCAGCAGGGATGGTGGTAGTCATGGAGATTCTGGAAGTGATCGATTTTATCGTGATCGTTCAGGACCATATGAGCGAGAGCGACGGGGATCAGGAGGCTTTCGTTGA 711 0.4402 MRHTSVYNFSFPQTVFLPCVYSELLFHSSFKMSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLDGRTITVDRAQPQQGSTRGDGDRYRDRGRDRDRDHGGGGGRGSNGGECFKCGKPGHFARECPSEGSRGGKYGGRESRYGGSSGGGYGPDRADRSSGGRSRDGGSHGDSGSDRFYRDRSGPYERERRGSGGFR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00718 236 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Gma08g00718 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Gma08g00718 236 SUPERFAMILY Retrovirus zinc finger-like domains 134 172 IPR036875 GO:0003676|GO:0008270
Gma08g00718 236 MobiDBLite consensus disorder prediction 107 236 - -
Gma08g00718 236 Pfam Zinc knuckle 151 167 IPR001878 GO:0003676|GO:0008270
Gma08g00718 236 PANTHER TRANSFORMER-2-RELATED 32 193 - -
Gma08g00718 236 MobiDBLite consensus disorder prediction 123 142 - -
Gma08g00718 236 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 32 193 - -
Gma08g00718 236 SUPERFAMILY RNA-binding domain, RBD 31 146 IPR035979 GO:0003676
Gma08g00718 236 MobiDBLite consensus disorder prediction 197 236 - -
Gma08g00718 236 Gene3D - 28 147 IPR012677 -
Gma08g00718 236 SMART rrm1_1 39 112 IPR000504 GO:0003723
Gma08g00718 236 Gene3D - 148 204 - -
Gma08g00718 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Gma08g00718 236 ProSiteProfiles Zinc finger CCHC-type profile. 152 167 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00718 Gma-Chr8 5909048 5912444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00718 40 128 Eukaryotic Initiation Factors Gene Family AT1G71770 34.375 4.77e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00718 - - gsj:114421428 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01218 05 33892253 33893895 Gma08g00718 08 5909048 5912444 GST