Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00680 ATGTCGGAGCGTTCGTCTTTCGGATTGGGACCTCGATTAGATCTTCAGCAATTACAACTTGAAGCCCAGCATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGTAATTATCGGATGTTTCAAATCACATCAGAACCACCTAACAGGCCACCAAGTGGTTCCCTTTTTCTATTTGATCGGAAGGTTTTAAGGTACTTTAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCACATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACTGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAAACCAATATTGGTGGAAAAACATATTCTGATGAGGTTACATCAGATTCCCAGAAGAGCAGTTCTTTGTCATCTGGCTTTCCCAGAAATTATGGTAGTATGCCTTCAGGAAGTACAGATTCCATGAGCCCAACGAGCACTTTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCAAGTTCAGGATTACACTCCTATCGTGAATCACAAAATTTGGGGAATGATCGTCCGATGGATAAGATTCATGCTCGTTCAAATAGTTCCTATCTTATGCATCCATTTTCAGATAATCATGGGCAGTTACCAGTTTCTGGAGCAGAATATATCCCACATGTTCAGGGGAATAAGTCTAGAGCTAGTGATACTACTTACATTGAGGGTCAGAGAGCACATGGCATTGCATCCTGGGACAATGCCATGGAACAGTCTGCAGGAAAGCATGCTGATCCTTCTCTTGTATCATCTACGTCCATTCCATCAAGTGCAATGGGAAACATACTTGACAAAAACCATACTGTTCCAGGCAACCTTTTAGGGCATAAAATTGCCCTCACTGAAGTGGAAAGGGGCGCTCAGCCTGTCCAATCAAACTGGCAGATTCCTTTTGAAGACAATACTGGAGAATTGCCTAATTGGGGCTTTACCCAATCATTGGGTTTGGAATTTGGATCTGATTATGGTACTAGTTTACTGGGGGATGTAACTAATAATGCAGGCCCAGAAATTGATCCTGAGCTGTTCACTTTTAATGGTGAGTTAAAAGAGCAGTATACACATGGGCAATCTCAACCTGCACTGAAATCCAATTCTGCGTATGAAGTTCCTGGTGAAGCAAGTATCAATTATGCCTTGACCATGAGGCGTGGATTATTGGATGGAGAGGAGAGCCTCAAGAAGGTTGATAGTTTCTCTAGGTGGATGACCAAAGAACTTGCAGGTGTGGATGATCTGCATATGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGAATGTGGGGATGTGATAGATGATACATCATTGCACCTGTCCCTGTCTCAAGACCAGCTGTTTAGCATAAACGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTAAAGAGTCAACCTGTGGTGGCAAAATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCCGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAGGGCTTCGATAGAAATATAAATTTTCCAGATTTTTTTAACAATTCAAGTGAAATGGAGCTTCATTTGCGACTGGTGGGGTTACTTTCGTTAAACTCAATGCACACTTTAAATCAAGTGTTTGAGGGTGATATGGATAAAAGAAACTTAATATTCAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCAAGTAAGGAAGAGACAACTGCAGAGATGGATATATCACAACAGAAGTTGAAGGAGCATATGTTTCACAAGCAGGTTAAGGAGAAGTTGTACTCATGGCTTCTTCACAAAGTTACTGAAACTGGTAAAGGGCCTCTTGTATTAGATGAAGAGGGGCAAGGCGTGTTACACTTAATTGCTGCTCTTGGTTATGATTGGGCTATAAATCCTATCATAACTGCTGGAGTCAATATCAACTTCCGTGACGTGAATGGATGGACAGCTCTACACTGGGCTGCATTCTGTGGCCGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGATGCAGCCGCTGGTGCATTGACAGATCCATGTCCCGAATTTCCTTTGGGTAGAACACCTGCAGATCTTGCTTCTAGCAAAGGCCACAAAGGAATTTCTGGTTTTCTTGCTGAGTCATTATTAACTAGCCACCTCGAATCACTCACAATGGATGAAAATAAAGATGGTAGGAAAGAAACTTCAGGAATGAAAGTAGTGCAGACAGTTTCAGAGCGAACTGCGACACCTGTGCTTAATGGTGATATACCTGATGATATCTGCCTTAAGGATTCTCTTAATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATATATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAGCTCTGTATGAAGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCTCTCCTAGCTTCTAAGGCGTGCAGATCTGGTCAAGGAGAGGGTTTAGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTTCGTGGTTGGACGAAGAGAAAAGAATTCTTGATTATTCGCCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGGAAGCAGTATAAACCAATCATTTGGTCTGTGGGAATCCTGGAAAAGGTTATATTACGCTGGAGACGCAAGGGCAGTGGTTTACGTGGATTTCGACCAGCTTCCCAGAACAAGGTCCCCGAACAACCAAGCGAATCTCCGAAAGAGGATGACTATGATTACCTCAAGGAAGGAAGGAAACAAAGTGAAGTGAAGTTCAAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATATCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGGTAATTTGAATTTGATAAATTCGGAAGAGACAGTCGACGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTACCTATAGCTTTCGATTGA 3240 0.4204 MSERSSFGLGPRLDLQQLQLEAQHRWLRPAEICEILRNYRMFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLELDMMHIVFVHYLDVKVNKTNIGGKTYSDEVTSDSQKSSSLSSGFPRNYGSMPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHSYRESQNLGNDRPMDKIHARSNSSYLMHPFSDNHGQLPVSGAEYIPHVQGNKSRASDTTYIEGQRAHGIASWDNAMEQSAGKHADPSLVSSTSIPSSAMGNILDKNHTVPGNLLGHKIALTEVERGAQPVQSNWQIPFEDNTGELPNWGFTQSLGLEFGSDYGTSLLGDVTNNAGPEIDPELFTFNGELKEQYTHGQSQPALKSNSAYEVPGEASINYALTMRRGLLDGEESLKKVDSFSRWMTKELAGVDDLHMQSSPGISWSTDECGDVIDDTSLHLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPVVAKCNWSCMFGEVEVPAEVLADGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNINFPDFFNNSSEMELHLRLVGLLSLNSMHTLNQVFEGDMDKRNLIFKLISLKEEEEYSSKEETTAEMDISQQKLKEHMFHKQVKEKLYSWLLHKVTETGKGPLVLDEEGQGVLHLIAALGYDWAINPIITAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMDAAAGALTDPCPEFPLGRTPADLASSKGHKGISGFLAESLLTSHLESLTMDENKDGRKETSGMKVVQTVSERTATPVLNGDIPDDICLKDSLNAVRNATQAADRIYQVFRMQSFQRKQLALYEDDEFGLSDQQALSLLASKACRSGQGEGLANAAAIQIQKKFRGWTKRKEFLIIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPASQNKVPEQPSESPKEDDYDYLKEGRKQSEVKFKKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGGNLNLINSEETVDGVEDLIDIDMLLDDENFLPIAFD 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00680 1079 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1079 - -
Gma08g00680 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 953 IPR027417 -
Gma08g00680 1079 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gma08g00680 1079 Pfam IQ calmodulin-binding motif 928 947 IPR000048 GO:0005515
Gma08g00680 1079 Pfam IQ calmodulin-binding motif 905 923 IPR000048 GO:0005515
Gma08g00680 1079 Gene3D - 903 949 - -
Gma08g00680 1079 SUPERFAMILY Ankyrin repeat 685 789 IPR036770 -
Gma08g00680 1079 ProSiteProfiles IQ motif profile. 926 950 IPR000048 GO:0005515
Gma08g00680 1079 Pfam IPT/TIG domain 495 580 IPR002909 -
Gma08g00680 1079 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gma08g00680 1079 MobiDBLite consensus disorder prediction 146 187 - -
Gma08g00680 1079 ProSiteProfiles IQ motif profile. 903 932 IPR000048 GO:0005515
Gma08g00680 1079 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gma08g00680 1079 MobiDBLite consensus disorder prediction 971 994 - -
Gma08g00680 1079 Gene3D - 652 798 IPR036770 -
Gma08g00680 1079 SUPERFAMILY E set domains 495 581 IPR014756 -
Gma08g00680 1079 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1079 - -
Gma08g00680 1079 Gene3D Immunoglobulins 488 583 IPR013783 -
Gma08g00680 1079 SMART iq_5 925 947 IPR000048 GO:0005515
Gma08g00680 1079 SMART iq_5 902 924 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00680 Gma-Chr8 5628634 5639899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00680 1 1060 CAMTA Transcription Factor Family AT5G64220 53.389 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gma08g00680 CG-1 9.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00680 K21596 - gmx:100797717 2135.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01181 05 33470775 33481137 Gma08g00680 08 5628634 5639899 GST
Gma08g00680 08 5628634 5639899 Gma15g00515 15 4282205 4292905 PCT
Gma15g00515 15 4282205 4292905 Gma08g00680 08 5628634 5639899 PCT