Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00658 ATGGGTCTGAACTACAGAAATTTGTTCCCAGGAACACCATCAAACTGTCTACAAGACTGTTCTTATGATGATAAATCATCATGTTGTGATCCTTCTAATTTGCTCCCTCCAACTCCTCCTATCTACTCAGATAATGATTTGAGCCAAAGTCCCAGCAAACACATCAAAGCTGAATACTTGATCATAAGTTTCTCCATTGTAGCAACCGCTTTCATTGCCCTCTTCTGCTACGCCATCTACGTCAAGTTCTTCTCCCCTCGGAACACCTCAATTATCAGAAGAAGAAGAACAACAACAACAACAACCTTGTCACAGCCACAAACAGAACAATATTTCTTGGACGAGGAAGAACATGGTCCTGTCGTTGACCATCCCATCTGGTACATCCGCACCACCGGTCTCCAACAAGCAGTCATCACCGCCATCACCGTCTGCAATTACAAAAAAGACGAAGGCTTGATCGAAGGTACAGAATGTTCAGTTTGCCTCAGCGAGTTTCAAGAGGACGAAAGTCTCAGGCTTTTACCAAAGTGTAACCACGCTTTTCACTTACCTTGCATTGACACGTGGCTTAGATCGCACACCAATTGCCCCATGTGTCGTGCTCCTATTGTCACTGACCCAACAAGGGTTCCTTCTTCCATGGACCCTACTGCGTTTGAAACAAGTTCTTTTGTGGAGGAGATTTTTGAAAATAGTGCGGAGAATACTCAAAATAGTAGTGATGATTTGTTGAGGGGTGAGGAAGAGGAAAGAGTGCAAGAAGATGAAGCGTGTGAAGAGAACTTGGCTTCTGAACTTGTGGTGACTGTGCAGCAGCCGAGAAGATCGGTGTCTCTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCTACTGTTGTGTCAGGGGAATCTCACGGGGATCATTCAAAGAGGGTTGGTGGGAATGGGAATTTGGCTACTAAAGGTGGTTCTAGTTCTTGTTCTTCGACTAGTTCAGTGAAAAGGTCGCTATCATTCAATGCCAAACACTTGCTATCATGGTATAGCCGAAGTCAGAGAAAGCCAAATGCTCCTTTGAGAAGCTTCTGA 1077 0.4466 MGLNYRNLFPGTPSNCLQDCSYDDKSSCCDPSNLLPPTPPIYSDNDLSQSPSKHIKAEYLIISFSIVATAFIALFCYAIYVKFFSPRNTSIIRRRRTTTTTTLSQPQTEQYFLDEEEHGPVVDHPIWYIRTTGLQQAVITAITVCNYKKDEGLIEGTECSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSSMDPTAFETSSFVEEIFENSAENTQNSSDDLLRGEEEERVQEDEACEENLASELVVTVQQPRRSVSLDSSSAAKISLALATVVSGESHGDHSKRVGGNGNLATKGGSSSCSSTSSVKRSLSFNAKHLLSWYSRSQRKPNAPLRSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00658 358 MobiDBLite consensus disorder prediction 314 328 - -
Gma08g00658 358 MobiDBLite consensus disorder prediction 231 252 - -
Gma08g00658 358 Pfam Ring finger domain 158 201 IPR001841 -
Gma08g00658 358 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 345 IPR044675 -
Gma08g00658 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Gma08g00658 358 SUPERFAMILY RING/U-box 150 211 - -
Gma08g00658 358 CDD RING-H2_EL5_like 158 201 - -
Gma08g00658 358 PANTHER RING-H2 FINGER PROTEIN ATL54 13 345 - -
Gma08g00658 358 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Gma08g00658 358 MobiDBLite consensus disorder prediction 299 328 - -
Gma08g00658 358 SMART ring_2 159 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00658 Gma-Chr8 5452867 5454638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00658 51 256 C3H Transcription Factor Family AT1G72220 45.024 4.07e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00658 - - gmx:100819010 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00658 08 5452867 5454638 Gma08g00658 08 5452867 5454638 ECH