LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma08g00642	ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCCAGGCAAGTGACTTTCTCCAAGAGAAGGAAAGGGCTTTTCAAGAAGGCTCAGGAATTGTCAACCCTTTGTGATGCAGACATAGCTCTCATTGTTTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGTATGCATCAAGTAATTGAAAGGCGCGATAGCCATTCAGCAATGAATAGACTGGATCGCCCCTCAATTGAGCTGCAGATTGAGAATGACTCCAATGAAATCCTGCGCAAGAAAGTAGAAGATAAGAACCGTGAGCTGAGGCAGATGAATGGGGAAGATCTGCAAGGATTGACATTACAAGAACTGCATAAACTAGAGGAACACCTTAAAAGAGGTTTGATCAATGTTTCAAAAGTAAAGGATGAAAAACTTATGCAAGAGATCAGCACGCTTAAGAGAAAGGGAGTGGAACTAATGGAGGAAAACCAAAGACTGAAACAGGTGGTACCGAGCCTTATCCATGTACATAGGCAATCATCGGAATCCATTCTTAGCAATTCATCTAACCTTCCTGAAGATGGTGGTAGCGACACATCTCTCAAGTTGGGGTTACCTTAA	618	0.4191	MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMHQVIERRDSHSAMNRLDRPSIELQIENDSNEILRKKVEDKNRELRQMNGEDLQGLTLQELHKLEEHLKRGLINVSKVKDEKLMQEISTLKRKGVELMEENQRLKQVVPSLIHVHRQSSESILSNSSNLPEDGGSDTSLKLGLP	205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma08g00642	205	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Gma08g00642	205	ProSiteProfiles	K-box domain profile.	85	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma08g00642	205	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	189	-	-
	Gma08g00642	205	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Gma08g00642	205	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Gma08g00642	205	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Gma08g00642	205	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Gma08g00642	205	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Gma08g00642	205	Coils	Coil	148	168	-	-
	Gma08g00642	205	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Gma08g00642	205	MobiDBLite	consensus disorder prediction	180	195	-	-
	Gma08g00642	205	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Gma08g00642	205	PANTHER	-	1	189	-	-
	Gma08g00642	205	MobiDBLite	consensus disorder prediction	180	205	-	-
	Gma08g00642	205	Coils	Coil	85	112	-	-
	Gma08g00642	205	CDD	MADS_MEF2_like	3	74	IPR033896	GO:0000977\|GO:0045944
	Gma08g00642	205	Gene3D	-	13	81	IPR036879	GO:0003677\|GO:0046983
	Gma08g00642	205	Pfam	K-box region	93	167	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma08g00642	Gma-Chr8	5331928	5342841	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma08g00642	1	205	MADS-box Gene Family	AT2G22540	49.789	9.74e-69	208

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gma08g00642		K-box	2.9e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma08g00642	-		-	gmx:100815814	378.252

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma07g01769	07	38837243	38854177	Gma08g00642	08	5331928	5342841	GST