Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00622 ATGGGGAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAATGGGTTAGTGAAGAAAGCTAGAGAGCTATCTATTCTGTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTATAACAAGGTCAAAGAAGACCATCAACAGTTAATAAATCCTGCATCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCTTGCGGCAACAAGTGCAGTACATGCAAGAATGTCACAGgcaaatgatgggccaagagctttctggattgggtatcgaagagttaggaaatctggaaaagcgactggagatgagtttaaagggtgttcgcatgaagaaggatcaaattctgattgatgaggtcaaagaactacaccaaaagggaagccttgctcatcaagaaaatgtagaacttaatagaaagataaatctcatccgcaaggaaaatgaagaactacaaaaggttattgAAGCTAAGTGTAGAAAAGGTGTTGCAGCATCCAATCCTCCATTCACTATCAACTATGGATGTAATATGCTTGCTCCTATCAGTCTCCAGCTAAGCCTGCCAGAGTCAACGTAG 666 0.2853 MGRGKIVIRRIDNSTSRQVTFSKRRNGLVKKARELSILCDAEVGLIVFSSTGKLYDYASTSMKSVIERYNKVKEDHQQLINPASEVKLWQREVASLRQQVQYMQECHRQMMGQELSGLGIEELGNLEKRLEMSLKGVRMKKDQILIDEVKELHQKGSLAHQENVELNRKINLIRKENEELQKVIEAKCRKGVAASNPPFTINYGCNMLAPISLQLSLPEST 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00622 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma08g00622 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma08g00622 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma08g00622 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma08g00622 221 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gma08g00622 221 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g00622 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma08g00622 221 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g00622 221 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Gma08g00622 221 Coils Coil 163 190 - -
Gma08g00622 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma08g00622 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma08g00622 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Gma08g00622 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 221 - -
Gma08g00622 221 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00622 Gma-Chr8 5133317 5138873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00622 1 215 MADS-box Gene Family AT2G14210 61.468 6.60e-86 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma08g00622 K-box 3.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00622 K09264 - gmx:100779647 432.565