Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00621 ATGGGGAGAGGAAAGATTCCCATTCGAAGAATCGAAAATTCGACGAACCGACAAGTGACTTTCTGTAAGAGAAGAAATGGGTTGCTGAAGAAAACTAGAGAACTATCCATTCTCTGTGATGCAGAAGTTGGAGTGATAGTGTTTTCCAGCACTGGCAAGCTTTATGAATATTCAAACACCAGCATGGAAACAATCATTGAGCGCTTTAACAAGCAAAACAATAATCATCATCGGCTAATGGATGCTACTTCAGCAATCAAGTTTTGGCAGGGAGAAGCAGCAAGCTTGAGGCAACAACTGCAGCATTTGCAAGAAAACCACAGgcaactgatgggtgaagaactttctggtttgggtattaatcagctaaaacatctggaaaatcaactacaaatgagtttgaataacgttcgcaataaaaaggatcacattttcagtgatgagatcaaggaattacaacaaaagggaagcttgattcgtcgacaaaatgaagaacttcataagaagatagaccttatccacaatgaaaatgcagaactaaagaagGTTATTGAAGCAAGGCATAAGGAAGAAGAAAGGGCAGCACTCAAACCTCCATGTGCTATCAAAAATAGATATGATACACTTGACCCTAACAGTCTGCAACAAAGGCAGTCCCAACCCCAACCCAGTGAACCATCAGCCGAAGTGATGATTATGGGGTACTCCCTCAAATTGAAGATGTAA 726 0.2948 MGRGKIPIRRIENSTNRQVTFCKRRNGLLKKTRELSILCDAEVGVIVFSSTGKLYEYSNTSMETIIERFNKQNNNHHRLMDATSAIKFWQGEAASLRQQLQHLQENHRQLMGEELSGLGINQLKHLENQLQMSLNNVRNKKDHIFSDEIKELQQKGSLIRRQNEELHKKIDLIHNENAELKKVIEARHKEEERAALKPPCAIKNRYDTLDPNSLQQRQSQPQPSEPSAEVMIMGYSLKLKM 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00621 241 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Gma08g00621 241 Coils Coil 149 193 - -
Gma08g00621 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma08g00621 241 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Gma08g00621 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma08g00621 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g00621 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma08g00621 241 Coils Coil 120 143 - -
Gma08g00621 241 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g00621 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma08g00621 241 Coils Coil 86 113 - -
Gma08g00621 241 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gma08g00621 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma08g00621 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma08g00621 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma08g00621 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 240 - -
Gma08g00621 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00621 Gma-Chr8 5099845 5120767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00621 1 232 MADS-box Gene Family AT2G14210 55.794 6.25e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma08g00621 K-box 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00621 K09264 - gmx:100779119 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00621 08 5099845 5120767 Gma15g00565 15 4668206 4681913 PCT
Gma08g00621 08 5099845 5120767 Gma13g02274 13 37554338 37564894 PCT
Gma15g00565 15 4668206 4681913 Gma08g00621 08 5099845 5120767 PCT
Gma13g02274 13 37554338 37564894 Gma08g00621 08 5099845 5120767 PCT