Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00617 ATGGAGAACTATCAGTACCCGGCGTCgtaccctgactccggcgagtcctccccgcgctcgcgcgagatcgacttcgagaacccgcCGCCGTGGGACGAGCAGCAGAACCAAAACTACAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCCCGCACCcacgacaatcagctctcctacgtcggcggcgacaccaagatcctcgccgtcgaccgctccgttaagttctccgccttcctctccaagctctccgccctctgcgactccccgccacaggacctcaccttcaagtaccagctccccggcgaagacctcgacgccctcatctccgtcaccaacgacgacgacctcgaacacatgatgcacgaatacgacagactctatcgccctaacctaaaacctgttagaatgagactcttccttttcacactctctaattcaaaccctaattcctctttctcctccgaacgcgaccgtttcgttgaggctcttaattcgggtccggttccttctcaaccCGATCCGATCAAAACCCCACCCGTTACGCCTTCTAATGTTGATTATCTCTTCGGTCTCGATAAAGCCGTTGCTCCTCCAAATCTTCCTCCGAACTTCGCAGCGGTTAAATTCCACGATCCGGTGCCGGAACCTGTCGCTCCGACGCCGGTAGAGTATCAATCGAGAGTTTCCGATCGGGTTGTTGGATCGGATCCGAATGTGAATTCGATGGAAATTCAGAGACAGATGCAGCAGGAGATGCAGCGATTGCAGATTGCGGAGAATGAATATCGTAGAAGGAGTGAGGATGGATTTGCAACTGGTTATGCTGCTGCAGCCGGAGGAGATTATTACATGCAGAAGGTGCAGGAGAAGGTTCCGCCGCAGAATGCGGCGGTGCCGCCTCCGGCGGCGTACTGGTCGGAGAAGCAGTTTTCCGGGGAGGGATATCAGACGACGGTGACGACGGCGGCTCCGGGAGGAGGTGACCAGCCGATGTATGTTATGGCGGCGCCGGGGACGTTCTATCACCACTCGCCGGTGATGCGACCTCCGGCGGCGGCGCAGGGATACTACGCTGTGCAGAGGATGGGTTCTGATGGCTACCGTGAACAGCAGGCGGTGTACGGAGGCATGGCTGCGCCGAAAGCGGGGTTTTCGACGGCGGGGATGGTTAAGGGGCCGGCGTATTCGGAGGGATATAGTGGCGGCGTGGTGAGGCCGGCGGGGTTGCCGGATAATGCGGCGTATGCGCAGGTGGCGTATGATAGCGCGAGTGGGAGACAGGTTTACTATACTGCGCAGGGAGGAGTGGTGCACGCGCCGCCGCAGTACCAGGGGGGTCCGCCTCAGGATGTGAGGCCGGGTGGGGTTTCGGTGGGGCAGGATGGTAAGGTGGTTAACAAGGTTAACCAAGGTTCTGTGTGA 1431 0.4158 MENYQYPASYPDSGESSPRSREIDFENPPPWDEQQNQNYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRSVKFSAFLSKLSALCDSPPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNLKPVRMRLFLFTLSNSNPNSSFSSERDRFVEALNSGPVPSQPDPIKTPPVTPSNVDYLFGLDKAVAPPNLPPNFAAVKFHDPVPEPVAPTPVEYQSRVSDRVVGSDPNVNSMEIQRQMQQEMQRLQIAENEYRRRSEDGFATGYAAAAGGDYYMQKVQEKVPPQNAAVPPPAAYWSEKQFSGEGYQTTVTTAAPGGGDQPMYVMAAPGTFYHHSPVMRPPAAAQGYYAVQRMGSDGYREQQAVYGGMAAPKAGFSTAGMVKGPAYSEGYSGGVVRPAGLPDNAAYAQVAYDSASGRQVYYTAQGGVVHAPPQYQGGPPQDVRPGGVSVGQDGKVVNKVNQGSV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00617 476 Pfam PB1 domain 56 144 IPR000270 GO:0005515
Gma08g00617 476 Gene3D - 61 145 - -
Gma08g00617 476 SMART PB1_new 55 144 IPR000270 GO:0005515
Gma08g00617 476 MobiDBLite consensus disorder prediction 1 16 - -
Gma08g00617 476 CDD PB1_UP2 44 144 - -
Gma08g00617 476 PANTHER OS05G0427100 PROTEIN-RELATED 1 472 - -
Gma08g00617 476 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 472 - -
Gma08g00617 476 SUPERFAMILY CAD & PB1 domains 56 150 - -
Gma08g00617 476 Coils Coil 244 271 - -
Gma08g00617 476 MobiDBLite consensus disorder prediction 1 34 - -
Gma08g00617 476 MobiDBLite consensus disorder prediction 446 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00617 Gma-Chr8 5072715 5074300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00617 39 168 MAP Kinase Kinase Kinase AT5G57610 42.336 1.49e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00617 - - gmx:100810467 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01792 07 39072132 39073553 Gma08g00617 08 5072715 5074300 GST
Gma08g00617 08 5072715 5074300 Gma15g00573 15 4760746 4762426 PCT
Gma08g00617 08 5072715 5074300 Gma13g02265 13 37468642 37470405 PCT
Gma15g00573 15 4760746 4762426 Gma08g00617 08 5072715 5074300 PCT
Gma13g02265 13 37468642 37470405 Gma08g00617 08 5072715 5074300 PCT