Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00583 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAACTTGTGGAGTAGTACTACTATTGATTCAACAAGAAGTAGTGTGTTGTTCCCTCTGAGTTCATCATCATCATCATCTATATCTTCTTCTCCTTGTTCTGTGGCAGCTAATAATAATGATGCAGGAAACTATAGCACTAGGGGAACTAGTGACACGGATTTGAAGGCAACAAAATGTTGTGCTGAAGACACTAATGGCAACAATTTGGTTTCTGACACTACTTACCTGGGTTTCGTTGATTTACAGAAGCCACATAATAAGAGTGAATCAGCAGCCAGTGGAAGTGGTGGCATGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTCACATCTTCAACATCATCTTCAGAGAATTGGAATCAGCCTCTGTTATTTCGATGTAACGGAAGGGCAGAGAGCAATTTCCACTCCTTGATTCAGGAAGAAACGGGAATGGATTCTTCTAATTCACAAATCCATAGGGATTGGATCCCAAAGAGCTTCTCCTCTGGCGGTGGAAACCAACAAATTGATTATAATAATTTCAAGCCATTATTATTGAACAAACAAGAATTTTCATTAGATCACCATAGTCTAAGTTCTTTAACCACTACTGGGTTATCATCAAACCATGGATTCCCAATTGGATCAGCCTCATCATATGGTAACCCTTCAACGTTGCAAAGCCTATATGACCCTAATTATAATCCTCATCCACAGCATAACTCACTTTTCACCAACCGTCCCATGTTCTATTCATCAAAAGCATGTTATGGGACACCCTGCACCGAACTACCACAAACATGGTCTAAAGTCTCCACTTTTTTGAAGCCCACGACCACAACAATTGCAAAGCAACAACACCCTAATATTGGACTTCACTTTTCTAACAACACTCCTTTCTGGAATGCTTCCGCCGAGGCACTTCACGACATAAGAGTTGGTACGTTTGCTTCATCACAATCACAATATCATAGGCCAACCTTCGATGGAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGTTCAATAGTGAAAAAACTCTAGAGTCGGCATCAATGATGACTAAGAAAAATGTTTGTGAACCAGCATTAAAGAGGCCAAGAATTGAAACTTCATCTCCATTGCCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCCGTTCTTCACGAAGCCATCGAATACATTAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTACTTCATATATGAAAAATGGAGCTCCCATTCAACATCAGCAGGGCTGTGATGATCTGAAAGACTCAGAAGGACCACAACAAGATTTGAAAAGCAAAGGGCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTGGCAACAGAAGCCACTAGTGCTGAATTGTGGACGCCTACATTCAGATCAGGCGCACTCTTGCGGTAG 1506 0.417 MAEEFQARICGENLWSSTTIDSTRSSVLFPLSSSSSSSISSSPCSVAANNNDAGNYSTRGTSDTDLKATKCCAEDTNGNNLVSDTTYLGFVDLQKPHNKSESAASGSGGMLIDSTLQMMGFGLTSSTSSSENWNQPLLFRCNGRAESNFHSLIQEETGMDSSNSQIHRDWIPKSFSSGGGNQQIDYNNFKPLLLNKQEFSLDHHSLSSLTTTGLSSNHGFPIGSASSYGNPSTLQSLYDPNYNPHPQHNSLFTNRPMFYSSKACYGTPCTELPQTWSKVSTFLKPTTTTIAKQQHPNIGLHFSNNTPFWNASAEALHDIRVGTFASSQSQYHRPTFDGEKPNCPSTLLNKFNSEKTLESASMMTKKNVCEPALKRPRIETSSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQHQQGCDDLKDSEGPQQDLKSKGLCLVPISSTFPVATEATSAELWTPTFRSGALLR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00583 501 CDD bHLH_AtbHLH_like 384 435 IPR045239 -
Gma08g00583 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 378 427 IPR011598 GO:0046983
Gma08g00583 501 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 81 488 - -
Gma08g00583 501 Gene3D - 388 449 IPR036638 GO:0046983
Gma08g00583 501 PANTHER TRANSCRIPTION FACTOR BHLH123 81 488 - -
Gma08g00583 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 445 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00583 Gma-Chr8 4823513 4827259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00583 140 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 36.543 9.10e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00583 - - gmx:100813887 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01827 07 39436647 39439924 Gma08g00583 08 4823513 4827259 GST
Gma08g00583 08 4823513 4827259 Gma15g00609 15 4984799 4988153 PCT
Gma08g00583 08 4823513 4827259 Gma13g02224 13 37158649 37161732 PCT
Gma15g00609 15 4984799 4988153 Gma08g00583 08 4823513 4827259 PCT
Gma13g02224 13 37158649 37161732 Gma08g00583 08 4823513 4827259 PCT