Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00579 ATGGGAGGTTCCACTAACCCCCTATCTCTCTTCCTTCTCTGCTTCaccacttttctcactctctttgaagtttcaatctccacagacaccttaacaagttcacaatccctccgaacaaaccaaaccctcctctccccaaacgcgatttttgaactgggttttttttcctacaccaattccacctggtacttgggcatttggtacaaaaccatccacgacagagatagaacagtggtgtgggtcgcaaaccgagacatcccacttcaaacctccctcggattcctcaaaataaacgaccaaggaaacctcgtcatcataaaccaatcccagaagcccatatggtcctcaaatcaaaccacaacaacaccctccaatctaattcttcagcttttcgattcgggaaacctggttctcaaagaaccaaacgagaatgacccaaagaaaattctctggcagagcttcgattacccaacagacaccttgttaccgggcatgaaactaggttggaacttcgacacaggcatagaaaagcacataacctcgtggagtgccacgaacgaagacccttcaagcggggatttTTCCTTCAAGCTCGATCCACGTGGCCTTCCGGAAATATTCCTCTGGAACAAGAACCAGAGAATCTACCGTAGCGGCCCTTGGAACGGCGAGAGATTCAGCGGGGTGCCCGAGATGCAACCCAACACAGATTCCATCAAATTCACGTTCTTTGTGGACCAACACGAAGCTTACTACACTTTCTCAATTGTGAACGTTTCTTTGTTTTCTAGACTCTCTGTGAACTCAATTGGGGAACTCCAACGCCTCACGTGGATCCAAAGCACACAGGTGTGGAACAAATTCTGGTATGCTCCAAAGGACCAATGCGACAACTACAAAGAGTGCGGGGCGTACGGGGTGTGTGACACGAACGCGTCACCGGTGTGTCAGTGTATCAAAGGGTTCCGGCCGAGGAACCCGCAGGCGTGGAATCTGCGAGACGGGTCTGATGGGTGTGTGAGGAACACGGAATTGAAATGTGGGAGTGACGGGTTTCTGCGAATGCAGAATGTGAAGTTGCCTGAAACAACGTTGGTGTTTGTGAACAGGAGCATGGGGATTGTGGAGTGTGGAGAATTGTGTAAGAAGAATTGTTCTTGCAGTGGTTATGCGAATGTTGAGATAGTGAATGGAGGGAGTGGGTGTGTGATGTGGGTTGGGGAGCTTTTGGATGTGAGGAAATACCCCTCGGGAGGGCAAGATCTTTATGTCAGATTGGCTGCTTCTGATGTAGATGACATAGGGATTGAAGGTGGTTCTCACAAGACAAGTGATACAATTAAGGCTGTTGGCATTATAGTTGGCGTTGCAGCTTTTATACTATTGGCATTGGCCATCTTTATCTTGTGGAAGAAGAGGAAATTGCAGTGTATATTGAAATGGAAGACAGATAAAAGAGGTTTTTCAGAAAGAAGTCAGGATTTGTTAATGAATGAGGGAGTGTTTTCAAGTAACAGAGAACAGACAGGTGAAAGTAACATGGATGACCTAgagttaccattgtttgattttaacacaataacaatggctacaaacaacttctctgatgaaaacaaacttggacaaggaggctttggtattgtttacaaaggcaggttgatggaaggtcagaacattgctgtgaagagattatcaaaaaattccgggcaaggaattgacgagtttaagaacgaggtcaagttaattgtcaagcttcaacatcgaaatcttgttcggcttcttggttgcagcattcagatggatgagaagatgctagtgtatgagtacatggaaaatagaagccttgatgccattttgtttgacaaaacaaaaagatcctcactggattggcaaaggcgattcaacattatatgtggaattgctagagggctcctttatttgcaccaagattccagatttaggatcatccatagggatctcaaggcaagcaacattctacttgacaaagagatgaacccaaagatatcagactttgggatggctagaatttttggcaccgatcagacagaagcaaataccatgagagttgttggaacatatggttacatgtcccctgaatacgctatggatgggatcttctcagtaaaatctgatgtttttagttttggggttcttgtgctggagatcataagtggaaaaaagaacagaggattctattccgcgaacaaagaattgaatcttctagggcatgcgtggaagctgtggaaagaagaaaatgctttggaactgattgatccgtcgatcgacaattcatattcagaatctgaagttcttagatgcatacaagtcggtctcttatgcgtgcaagagcgtgcggaagataggccaacaatggcttctgtggtcttgatgctgagtagtgacactgcatcaatgtcacaacccaaaaaccctggATTTTGTCTAGGAAGGAATCCTATGGAAACTGATTCTTCTTCAAGTAAACAAGAAGAATCATGCACTGTGAACCAAGTCACTGTCACAATGCTAGATGCCAGGTAG 2562 0.203 MGGSTNPLSLFLLCFTTFLTLFEVSISTDTLTSSQSLRTNQTLLSPNAIFELGFFSYTNSTWYLGIWYKTIHDRDRTVVWVANRDIPLQTSLGFLKINDQGNLVIINQSQKPIWSSNQTTTTPSNLILQLFDSGNLVLKEPNENDPKKILWQSFDYPTDTLLPGMKLGWNFDTGIEKHITSWSATNEDPSSGDFSFKLDPRGLPEIFLWNKNQRIYRSGPWNGERFSGVPEMQPNTDSIKFTFFVDQHEAYYTFSIVNVSLFSRLSVNSIGELQRLTWIQSTQVWNKFWYAPKDQCDNYKECGAYGVCDTNASPVCQCIKGFRPRNPQAWNLRDGSDGCVRNTELKCGSDGFLRMQNVKLPETTLVFVNRSMGIVECGELCKKNCSCSGYANVEIVNGGSGCVMWVGELLDVRKYPSGGQDLYVRLAASDVDDIGIEGGSHKTSDTIKAVGIIVGVAAFILLALAIFILWKKRKLQCILKWKTDKRGFSERSQDLLMNEGVFSSNREQTGESNMDDLELPLFDFNTITMATNNFSDENKLGQGGFGIVYKGRLMEGQNIAVKRLSKNSGQGIDEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYMENRSLDAILFDKTKRSSLDWQRRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGTDQTEANTMRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIISGKKNRGFYSANKELNLLGHAWKLWKEENALELIDPSIDNSYSESEVLRCIQVGLLCVQERAEDRPTMASVVLMLSSDTASMSQPKNPGFCLGRNPMETDSSSSKQEESCTVNQVTVTMLDAR 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00579 853 Gene3D - 23 154 IPR036426 -
Gma08g00579 853 CDD PAN_AP_plant 343 427 - -
Gma08g00579 853 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Gma08g00579 853 Pfam Receptor serine/threonine kinase 490 524 IPR022126 GO:0004674
Gma08g00579 853 Gene3D Phosphorylase Kinase; domain 1 508 609 - -
Gma08g00579 853 Pfam Protein tyrosine and serine/threonine kinase 537 803 IPR001245 GO:0004672|GO:0006468
Gma08g00579 853 CDD STKc_IRAK 540 805 - -
Gma08g00579 853 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 852 - -
Gma08g00579 853 SMART blect_4 34 157 IPR001480 -
Gma08g00579 853 SUPERFAMILY Protein kinase-like (PK-like) 513 805 IPR011009 -
Gma08g00579 853 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Gma08g00579 853 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Gma08g00579 853 Pfam PAN-like domain 347 412 IPR003609 -
Gma08g00579 853 PIRSF SRK 4 853 IPR024171 GO:0004674
Gma08g00579 853 SMART ntp_6 347 426 IPR003609 -
Gma08g00579 853 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Gma08g00579 853 ProSitePatterns Protein kinases ATP-binding region signature. 540 562 IPR017441 GO:0005524
Gma08g00579 853 PANTHER - 16 852 - -
Gma08g00579 853 Gene3D Transferase(Phosphotransferase) domain 1 610 818 - -
Gma08g00579 853 Pfam D-mannose binding lectin 77 182 IPR001480 -
Gma08g00579 853 CDD B_lectin 34 157 IPR001480 -
Gma08g00579 853 SMART serkin_6 534 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00579 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Gma08g00579 853 ProSiteProfiles Protein kinase domain profile. 534 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g00579 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 223 IPR036426 -
Gma08g00579 853 Pfam Domain of unknown function (DUF3403) 807 853 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00579 Gma-Chr8 4773099 4782379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00579 522 853 Receptor kinase-like Gene Family AT4G11530 58.457 2.52e-135 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma08g00579 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00579 - - gmx:106799702 1706.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00579 08 4773099 4782379 Gma15g00615 15 5034607 5041025 PCT
Gma08g00579 08 4773099 4782379 Gma13g02217 13 37102505 37107552 PCT