Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00573 ATGTCGAAAACTCCGAAGGAGAAGGAAACGGAGGAGCCTCTGCCAGACCACCTCCGCTGCGGGCGCACGGACGGGCGGCAATGGCGTTGCCGGCGGCGAGTGAAGGAGAATCTGAAGCTCTGCGAGATTCACTACCTCCAAGGTCGCCACCGCCAGTACAAGGAGAAGGTTCCCGAGTCGCTGAAGCTTCAGCGCAAGCGCAAATCTAACAACAACAACAACAACAACAACGAGgaagaagaagaagaagaagaagaagaGAAACCAGAGCCTGATAAGAAGAATGTTCTCGACGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCATGCTTTCTGAGGATTCCGATGCTTCAGCTTCTTCTCCTCCGGCGAGGAAGAAGGCGCTGAAGCAGGGCGATATGCAGTTGGAGCTCTTGAGGATGGTGCTGAAGAGAGAGGCTGAGAAGAACAAAAACAAGAGCAAGAGCAAGaacaagaagaacaataacaaaaagaagaataagaagaagGAAAAGAGGAGGAAGGAGGAAAAAGAGGAATTGTGTTACACTAAAGAAGAGTTGAGAAGAGAATTGCCAAATGGAGTAATGGAAATCTCTCCGGCTTCACCGACGCGTGATTACAACAATGTAGGTTCGCATTGTGATGTCAAAGTTGGTGTTGATAGTAAAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCCGCGGGGAAGTTGCAGATTGTGCCGTATGGATCAAACTTGAAAAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGTGAGTCTGGGAATCTCATTCAATGTTCGAGCTGTCAGAGGGAGTTCTTCTGCATGGATTGCGTTAAAGAGCGGTATTTTGACGCTGAAAATGAAATTAAGAAGGCATGTCCAGTTTGTCGTGGAACTTGCCCTTGTAAGTATTGCTCTGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATGTTTGACTGGTAAGAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCAAATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGTAAAAATTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGATGCAGTGAGAAAAACTATTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAGCTGTCCTAGTTGTTCATATAGCCTATGCTCAAGTTGTTGTCAGGAATTAAGTCAAGGAAAAGCTTCTGGAGCAATGAACTCATCCGTGTTCAAGCGACCTGATAAAATGAAACCTTGCAGTGCTAGTGAGAACCATACTTTGGAGGAGAGAGCCACATCTATTGGCAATTTAACTGATACTTCAGTATTGCCTGAGTGGACAAATGGTAATGGCATTGATAGTCTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAAAAGCCACCTTGAGTTGAGATCTGTTTTCCCTTCCAGTTGGATCAAAGAGATGGAAGCGAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGTTGCTCATTGTGTTTTGACACTGATCATGGTACTAACAGATATAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCCACAGTGATGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTTGTCCAAGATGCGCTCCGAAGTACCTCAAACCTCAGTTGGGATCCACTGACCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAACAATAAAAACTTGCTTGAATCCTGTTTGGATTGGTGGGAGgtggaaattaacattaagcagtactttactgggtctgtcaagcgtcgtcctcagagaaacacttgggatgagatgctgaaactaaaagggtggctttcttcccaaatatttaaagagcagtttccagctcattttgctgaggtaattgatgctctaccagttcaagaatacatgcatcccctctgcggtcttctgaatttagctgcaaatttgccacatgggagtgcaaaacatgacattgggccatatgtctacatttcttatggctctgctgacaaagaaactgattcagtgacaaagctctgctatgactcatatgatgtgGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACAAAAATAAGAAAACTGCTAAAAAAGCACAAAACTCTGTGTCAAATGGAGACTATTGCTACTGAGGAGCCACGGGAACAGAAATTGAATGGAATGGCATTATTGCATGGTCCAGAAACAGAGCGAAAAGGCTCATGGAGTATGGTCGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGCTAAAAAAGTTTCTAGTCAGAGCATGGACAGCAATGGAGAATGTGATTTCATTTCTGATTCTGATTCTGGATCCACTTTACTTCTCCTTGGGACTGTTCAAACTGCTGAATTGTCAAAGCACAATAATCCTAGAAATCCCTTTGAAAGCTCAAAAAGACATAAAAAAAAGTTTACTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTTCCAAAGCTCATCGAATACCTTAAAAGACATTATGCTGAATTTTCTTATACCCATGACTATGACAAGAAGatggttcatccaattctagatcagagcatttttcttgacagtactcacaaaaagagactaaaggaggaatttaagattgaaccatggacttttcagcaacatgttggacaagctgtcatcattcctgctggatgtccataccagatgaggaattctaagtctagcgttcatgcggtattggaatttgtgtcccctgaaaatgttactgagggtatccagttgattgatgaggtccgactattgcctgaagaccataaagcaaaagcagacctgctggagGTAAAGAAAATGGCGCTTCATAGCATGAATACAGCAATTAAAGAAGTACGTCAGCTTACAAGCAAAACATGA 3144 0.3362 MSKTPKEKETEEPLPDHLRCGRTDGRQWRCRRRVKENLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKSNNNNNNNNEEEEEEEEEEKPEPDKKNVLDDNVESRARRTSRIVKKKRMLSEDSDASASSPPARKKALKQGDMQLELLRMVLKREAEKNKNKSKSKNKKNNNKKKNKKKEKRRKEEKEELCYTKEELRRELPNGVMEISPASPTRDYNNVGSHCDVKVGVDSKTVTPRYFRSKNVDRVPAGKLQIVPYGSNLKKGKRKKCHWCQRSESGNLIQCSSCQREFFCMDCVKERYFDAENEIKKACPVCRGTCPCKYCSASQCKDSESKECLTGKSRVDRILHFHYLICMLLPVLKQISEDQNIELETEVKIKGKNISDIQIKQVEFGCSEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCQELSQGKASGAMNSSVFKRPDKMKPCSASENHTLEERATSIGNLTDTSVLPEWTNGNGIDSLSCPPTELGGCGKSHLELRSVFPSSWIKEMEAKAEEIVCSYDFPETSDKSSSCSLCFDTDHGTNRYKQLQEAALREDSNDNYLFCPTVMDISGDNFEHFQKHWGKGHPIVVQDALRSTSNLSWDPLTMFCTYLEQSITRYENNKNLLESCLDWWEVEINIKQYFTGSVKRRPQRNTWDEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMHPLCGLLNLAANLPHGSAKHDIGPYVYISYGSADKETDSVTKLCYDSYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMETIATEEPREQKLNGMALLHGPETERKGSWSMVEEGMNFFRRVNRTSCISTEAKKVSSQSMDSNGECDFISDSDSGSTLLLLGTVQTAELSKHNNPRNPFESSKRHKKKFTEHLGAQWDVFRRQDVPKLIEYLKRHYAEFSYTHDYDKKMVHPILDQSIFLDSTHKKRLKEEFKIEPWTFQQHVGQAVIIPAGCPYQMRNSKSSVHAVLEFVSPENVTEGIQLIDEVRLLPEDHKAKADLLEVKKMALHSMNTAIKEVRQLTSKT 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00573 1047 ProSiteProfiles JmjC domain profile. 701 1010 IPR003347 -
Gma08g00573 1047 MobiDBLite consensus disorder prediction 44 139 - -
Gma08g00573 1047 PANTHER PROTEIN B160 10 1046 - -
Gma08g00573 1047 MobiDBLite consensus disorder prediction 153 187 - -
Gma08g00573 1047 ProSiteProfiles Zinc finger RING-type profile. 268 314 IPR001841 -
Gma08g00573 1047 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Gma08g00573 1047 SUPERFAMILY Clavaminate synthase-like 581 1033 - -
Gma08g00573 1047 SMART cupin_9 682 1010 IPR003347 -
Gma08g00573 1047 Pfam WRC 15 56 IPR014977 -
Gma08g00573 1047 Coils Coil 151 188 - -
Gma08g00573 1047 MobiDBLite consensus disorder prediction 89 107 - -
Gma08g00573 1047 MobiDBLite consensus disorder prediction 161 179 - -
Gma08g00573 1047 MobiDBLite consensus disorder prediction 1 26 - -
Gma08g00573 1047 MobiDBLite consensus disorder prediction 44 66 - -
Gma08g00573 1047 Gene3D Cupin 570 813 - -
Gma08g00573 1047 Gene3D Cupin 825 1019 - -
Gma08g00573 1047 ProSitePatterns TNFR/NGFR family cysteine-rich region signature. 294 335 IPR001368 GO:0005515
Gma08g00573 1047 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 1046 IPR045109 GO:0032454|GO:0033169
Gma08g00573 1047 Coils Coil 61 88 - -
Gma08g00573 1047 Pfam JmjC domain, hydroxylase 896 987 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00573 Gma-Chr8 4727377 4733349 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma08g00573 JmjC 5.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00573 K15601 - gmx:100810673 2004.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01834 07 39531839 39538119 Gma08g00573 08 4727377 4733349 GST
Gma08g00573 08 4727377 4733349 Gma15g00628 15 5144401 5149832 PCT
Gma08g00573 08 4727377 4733349 Gma13g02204 13 37001858 37007267 PCT
Gma15g00628 15 5144401 5149832 Gma08g00573 08 4727377 4733349 PCT
Gma13g02204 13 37001858 37007267 Gma08g00573 08 4727377 4733349 PCT