Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00571 atgggtagatcaccttgttgtgacaaaaatggcctcaagaaaggaccatggacaccagaagaagaccagaaactctttgattacattcagaaacatgggtacggcaattggagagtactcccaaagaatgctgGTTTGCAAAGGTGCGGAAAAAGCTGTCGGCTTCGTTGGACAAACTATCTCCGACCAGATATAAAACGAGGTCGATTCACTTTGGAAGAGGAAGAGACCATAATACAACTACATAGCATTCTTGGCAACAAGTGGTCAGCTATTGCTACTCGCttacccggaagaacagacaatgaaatcaagaattactggaacacCCACATTAGAAAAAGGCTTCTAAGGATGGGAATGGACCCTGTGACACATAGGCCAAGGCTTGATCTTTTGGACCTATCTTCCATCCTAAGTTCATCTCTCTATGGTTCAACACAAATGAACATCCAAAGACTTCTTGGCACTCACACGGTGGTGAACCCTGAGGTTCTAAAGTTGGCTTCATCACTCTTCCCCTCTCAGCAACGCGAAAACATCAACATGTGTGCACAAAATTGTGAAGAGAACCAGCTCTGTGACCCCCAAATTCAGAGCCAAATCCCTCATGACTTGGCTCAAGAAGCATTGCCTTTCACTCATGCACAGTTGGTTGAATCCAATACGATGAACACATACCCTTCAATTTTCCATGAATCTGGCTTCCAACAACATTATTCTCAACTAAGTGATTTGCATTACAACGGAATTGATCATAAAAGCTATGTTCCTCAATTACCAAGCTATGATTACCCTCCAATGTCTGAATCCTCAACTTATAACAATTCCTATAATAACAGCAACCAGAACTTCAGCTACGCTTCAGTTCTTTCAACGCCTTCTTCAAGTCCCACACCGTTGAATTCGAACTCGACGTTTGTCAAGGGGAGCAGCAGCACTGAGGATGAGACAGAAAGCTATGTCAGTAGCAACAACTTGTTGAGATTTGAAATCCCAGATATGCTACGTATGAATGAGTACTCATATAATTAA 1035 0.3527 MGRSPCCDKNGLKKGPWTPEEDQKLFDYIQKHGYGNWRVLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTLEEEETIIQLHSILGNKWSAIATRLPGRTDNEIKNYWNTHIRKRLLRMGMDPVTHRPRLDLLDLSSILSSSLYGSTQMNIQRLLGTHTVVNPEVLKLASSLFPSQQRENINMCAQNCEENQLCDPQIQSQIPHDLAQEALPFTHAQLVESNTMNTYPSIFHESGFQQHYSQLSDLHYNGIDHKSYVPQLPSYDYPPMSESSTYNNSYNNSNQNFSYASVLSTPSSSPTPLNSNSTFVKGSSSTEDETESYVSSNNLLRFEIPDMLRMNEYSYN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00571 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma08g00571 344 CDD SANT 69 112 IPR001005 -
Gma08g00571 344 Gene3D - 13 66 - -
Gma08g00571 344 CDD SANT 16 61 IPR001005 -
Gma08g00571 344 Gene3D - 69 116 - -
Gma08g00571 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma08g00571 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma08g00571 344 SMART sant 66 114 IPR001005 -
Gma08g00571 344 SMART sant 13 63 IPR001005 -
Gma08g00571 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma08g00571 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma08g00571 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 337 - -
Gma08g00571 344 MobiDBLite consensus disorder prediction 289 321 - -
Gma08g00571 344 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma08g00571 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma08g00571 344 PANTHER TRANSCRIPTION FACTOR MYB41 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00571 Gma-Chr8 4707895 4709631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00571 1 341 MYB Transcription Factor Family AT4G21440 54.247 4.89e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma08g00571 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00571 K09422 - gmx:100810143 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01836 07 39557957 39559711 Gma08g00571 08 4707895 4709631 GST
Gma08g00571 08 4707895 4709631 Gma15g00630 15 5164453 5166184 PCT
Gma08g00571 08 4707895 4709631 Gma13g02202 13 36986511 36988317 PCT
Gma15g00630 15 5164453 5166184 Gma08g00571 08 4707895 4709631 PCT
Gma13g02202 13 36986511 36988317 Gma08g00571 08 4707895 4709631 PCT