Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00566 ATGTGGAGTTTCACTTTCTTTGAACGAGTTTCTAGAGCTTTCCGTGATCATGGGTCCAACTTCAAGCTTGTACTTCTCTGCACCACCGTAAGTGGTGGAGGGGTTCTGGCTTACGGAGAGGCTGTAGCCGCATCTGAAGCAGCGGCGACGACCACGGAGAAGAAGAAGGTGGTGGTACTGGGAACAGGGTGGGCTGGCACGAGTTTCTTGAGGAATCTGGACAACCCCAAATATGAGGTTCACGTGGTGTCCCCTCGCAATTACTTTGCATTCACTCCTTTGCTGCCTAGTGTTACCTGTGGCACCGTCGAAGCTCGCAGCATTGTCGAACCCGTCCGCAACATTTTCAGGAAGAAAAAGATGGACATGCAATTTAGTGAAGCAGAATGTCTCAAGATTGATGCAACAAACAGGAAAGTTTACTGTCGATCTAATATAAGTAATAATTTGAACGAGAAAGAAGAGTTTGTGGTGGACTATGACTACCTAATCATAGCCGTGGGAGCAAATGTCAACACATTTAATACTCCTGGAGTGATGGAGAATTGTCATTTCTTGAAGGAAGTTGAAGATGCACAGAAGATTAGAAGAACCGTTATTGACTGCTTTGAGAGAGCAAGTTTGCCTAGTGTAAGTGAAGAAGAAAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCTCACTACATGACTATGTCACTGAGGATTTGGTCAACATATATCCTGGGATAAAAGATCTAGTTAAAATTACACTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGAGAAGTTCGGAAGAGATGGTATTGATGTGAAAACCGGATCCATGGTTGTGAAGGTTTCTCAGAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGCAATTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATAAGAGATTTTATGTCACAAATTGGTCAGACTAACAGACGAGCCATAGCTACTGATGAATGGTTGAGAGTTGAAGCAACAAACAACGTGTATGCACTTGGTGATTGTGCCACAATAAACCAGCGAAAAGTCATGGAAGATATCGCGGCAATATTTAAGAAGGCTGACAAAGACAATTCAGGAACTCTTACTGTCAAAGAATTTCAGGAGGTATTGGCTGATATCTGTGAGAGATACCCTCAGGTGGAGCTATATCTAAAGAGTCAACAGATGCACAACATTGCTGATTTGTTGAAAGGATCCAAGGAAGATGTTGAAAAAGAATCTATTGAACTGAATATCGAAGAACTCAAAACCATACTCTCTAAAGTGGATTCCCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACCTACCTGGCCAAGTGCTTTAACCGGATGGAAGAGTGTGAGAAAAATCCAGAGGGTCCTATCAGGTTCAGGGGAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTCTAGGAGGAGAGCAAACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGCTCTCAATGGTTGTGGTATTCTGTCTATGCAAGCAAGCAAGGAATTTTGTTACTGATTCCTGATTCTTTGAATAACACAAGCAGACTCCTAGCGGGGTTGTCCAAGATGGGATTTGTTATCATGCTCTTGCTAGATTCAACTTTATATTCATTTCGGAGATGCTTGGTGATGTTAGCTTCTCGCGCCTAA 1812 0.431 MWSFTFFERVSRAFRDHGSNFKLVLLCTTVSGGGVLAYGEAVAASEAAATTTEKKKVVVLGTGWAGTSFLRNLDNPKYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKMDMQFSEAECLKIDATNRKVYCRSNISNNLNEKEEFVVDYDYLIIAVGANVNTFNTPGVMENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKKRILHFAIVGGGPTGVEFAASLHDYVTEDLVNIYPGIKDLVKITLLEAGDHILSMFDKRITAFAEEKFGRDGIDVKTGSMVVKVSQKEISTKEMKNGGAITTIPYGMAVWSTGIGTRPFIRDFMSQIGQTNRRAIATDEWLRVEATNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLADICERYPQVELYLKSQQMHNIADLLKGSKEDVEKESIELNIEELKTILSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQGILLLIPDSLNNTSRLLAGLSKMGFVIMLLLDSTLYSFRRCLVMLASRA 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00566 603 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491
Gma08g00566 603 SMART efh_1 382 410 IPR002048 GO:0005509
Gma08g00566 603 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Gma08g00566 603 PANTHER NADH DEHYDROGENASE 3 554 IPR045024 GO:0003954|GO:0006116
Gma08g00566 603 Coils Coil 442 462 - -
Gma08g00566 603 SUPERFAMILY FAD/NAD(P)-binding domain 216 375 IPR036188 -
Gma08g00566 603 SUPERFAMILY EF-hand 333 467 IPR011992 -
Gma08g00566 603 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Gma08g00566 603 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Gma08g00566 603 PANTHER NAD(P)H DEHYDROGENASE B2 3 554 - -
Gma08g00566 603 Gene3D - 45 425 - -
Gma08g00566 603 Gene3D - 426 557 - -
Gma08g00566 603 Pfam EF hand 383 409 IPR002048 GO:0005509
Gma08g00566 603 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Gma08g00566 603 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Gma08g00566 603 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00566 Gma-Chr8 4620485 4626845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00566 1 554 Chloroplast and Mitochondria Gene Families AT4G21490 72.352 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00566 K03885 - gmx:100800518 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01841 07 39646080 39651534 Gma08g00566 08 4620485 4626845 GST
Gma08g00566 08 4620485 4626845 Gma15g00635 15 5203986 5208629 PCT
Gma08g00566 08 4620485 4626845 Gma13g02196 13 36948509 36953862 PCT
Gma15g00635 15 5203986 5208629 Gma08g00566 08 4620485 4626845 PCT
Gma13g02196 13 36948509 36953862 Gma08g00566 08 4620485 4626845 PCT